Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq15 242 4e-59 seq1 174 2e-38 seq6 107 2e-18 seq3 107 2e-18 >seq15 Length=714589 Score = 242 bits (268), Expect = 4e-59 Identities = 694/1054 (66%), Gaps = 35/1054 (3%) Strand=Plus/Plus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCC 80784 ||||| || || ||||| || || |||| || |||||||| ||| || ||| Sbjct 177969 TCAGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCC 178028 Query 80785 TCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT 80844 || | ||||| ||| ||||||| ||||| |||||| || ||||| || Sbjct 178029 TCTTCGACAGGGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTGACAACTTGT 178088 Query 80845 GTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGA 80898 || || || || || |||| ||||| || |||| ||||| | || Sbjct 178089 GTGACTTCGTGGAGCTTCTTGAAGTCAAACACACCGGCCTTGTAGTCGACAAAAGAAGGC 178148 Query 80899 AGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATT 80958 ||| || || |||| ||||| ||||| ||||| |||| | | || |||| || || Sbjct 178149 AGGGCAAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATC 178208 Query 80959 TCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTG 81018 || |||||||| || || || ||||| ||||| |||||||| |||| |||| Sbjct 178209 TCAGTGCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTG 178268 Query 81019 CAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCG 81078 |||||||||||||| ||| | ||| |||| |||||| ||| | || || |||||| Sbjct 178269 CAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCG 178328 Query 81079 TCCCAAATCTC--GCGCGCCTTGACCAC-CTTGCGGAATTTGCCTTCGGC--CACATACT 81133 | ||||| || | |||| || || || |||| ||| ||| || | | || Sbjct 178329 TACCAAAGCTTTTGTGCGC---GAACAGTCTCGCGGCCCTTG--TTCTGCTTCTCGTAGC 178383 Query 81134 TGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAG 81193 | |||| | ||||| | |||||| | || | |||| | ||||||||||| | Sbjct 178384 TCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCG 178443 Query 81194 GGCACATCAGGTGCCAGTCGGTGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAGGGA 81250 ||||||| || ||||| || |||| ||| ||| ||||||||| |||||| | Sbjct 178444 GGCACATGAGTGTCCAGT---TGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAA 178500 Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCG 81308 |||| |||||| ||| || ||||| |||||| ||||||| | || ||||| ||| Sbjct 178501 TCCACAGGGCGTAGAAGAGATCGCG--AGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG 178558 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 || || || ||| | | || ||| || ||||||||||| || || | ||||| | || Sbjct 178559 CAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACC 178618 Query 81369 CTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 ||| ||||||||||| ||| || || ||||| ||| ||||||| | ||| Sbjct 178619 TGGGCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCAT 178678 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA- 81484 || |||| ||| | || ||||| || || |||| || || | || || | Sbjct 178679 GGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAAT 178738 Query 81485 -CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543 | ||| ||| || || || || || | ||| || ||| ||||| || Sbjct 178739 GCGGTGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG 178796 Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603 | || || ||||| || |||||||| || | |||||||| | | ||| || ||| Sbjct 178797 AGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGAC 178856 Query 81604 ATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGG 81663 || || || | || ||| || ||||||| || || | ||||| |||| || Sbjct 178857 ATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTT 178916 Query 81664 TTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATA 81723 | ||||| ||| ||||| || || | ||| || ||||||||||| || | | Sbjct 178917 TGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACA 178976 Query 81724 GCTACACGCATAAACATGTACTG-GGGCGTCTCG 81756 || |||||||| | ||||| || ||||| |||| Sbjct 178977 GCAACACGCATGAGCATGTGTTGTGGGCG-CTCG 179009 Score = 109 bits (120), Expect = 6e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || |||||||||||||| |||||||| || ||||||||| | |||||||||| Sbjct 177276 GTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAA 177335 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| ||||||||| ||||||||||| || Sbjct 177336 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGCGACTGAGACTGGTCAATA 177395 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATT 80190 ||||| ||||| || || ||||| ||||| ||| Sbjct 177396 AAAGCACCACGGTCAGCGGCCATCTCAATGATT 177428 >seq1 Length=2771824 Score = 174 bits (192), Expect = 2e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| |||||||| ||||| ||||| | || || ||||| | Sbjct 1871513 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 1871454 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || |||||||||||||| || ||||| |||||| Sbjct 1871453 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 1871394 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||||||||| || || || | || || || ||||||| || Sbjct 1871393 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 1871334 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || ||||| || | || | |||||||| || |||||| Sbjct 1871333 ATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGGACAA 1871283 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || || ||||| || ||| | Sbjct 1871741 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 1871682 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || || ||||||||||| |||||||| ||||| Sbjct 1871681 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 1871622 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | ||||| || | ||||| || Sbjct 1871621 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 1871562 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || || || ||| | || || |||||||| Sbjct 1871561 ATCCAAAAGGAGTCCACACTGCACCTTGTCCTCCGCCTGCGCGGTGG 1871515 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||||||||| ||| | || | ||| | ||| Sbjct 1872226 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGAGC 1872167 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| |||||||||||||| | || || || || ||| Sbjct 1872166 AAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 1872107 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| ||| ||||| | ||||| || |||| |||||||| || || ||| Sbjct 1872106 CAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGCAT 1872047 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | |||||||| || || Sbjct 1872046 CTCGTCCTCCGTCTTCGTGGAGG 1872024 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || |||||||||||||||||| || | ||| | || | ||| | Sbjct 1871945 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 1871886 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||| || ||||| || ||||| || || || || || || ||| Sbjct 1871885 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 1871826 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||| | || ||||| | ||||| || | || ||||| ||||| || || Sbjct 1871825 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 1871766 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || |||||||| Sbjct 1871765 CTTGTCCTCCGCCTGCGCGGTGG 1871743 >seq6 Length=1662277 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || || |||||||||||||| ||||| || ||||| ||||| || || || || Sbjct 181233 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCC 181292 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || |||||||||||||||| || || || | ||||| || |||| ||||| || || Sbjct 181293 GGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACC 181352 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||| | ||||| || ||||| Sbjct 181353 CTCCACTTGGTCCTCCGTCTCCGTGGTGG 181381 >seq3 Length=2234992 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 1534231 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 1534172 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || | ||||| || |||| ||||| ||||| || || | ||| | Sbjct 1534171 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTC 1534112 Query 27619 CGTCTTCGCGGTGG 27632 || ||||| ||||| Sbjct 1534111 CGCCTTCGTGGTGG 1534098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309287894720