Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq15 242 4e-59
seq1 174 2e-38
seq6 107 2e-18
seq3 107 2e-18
>seq15
Length=714589
Score = 242 bits (268), Expect = 4e-59
Identities = 694/1054 (66%), Gaps = 35/1054 (3%)
Strand=Plus/Plus
Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCC 80784
||||| || || ||||| || || |||| || |||||||| ||| || |||
Sbjct 177969 TCAGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCC 178028
Query 80785 TCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT 80844
|| | ||||| ||| ||||||| ||||| |||||| || ||||| ||
Sbjct 178029 TCTTCGACAGGGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTGACAACTTGT 178088
Query 80845 GTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGA 80898
|| || || || || |||| ||||| || |||| ||||| | ||
Sbjct 178089 GTGACTTCGTGGAGCTTCTTGAAGTCAAACACACCGGCCTTGTAGTCGACAAAAGAAGGC 178148
Query 80899 AGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATT 80958
||| || || |||| ||||| ||||| ||||| |||| | | || |||| || ||
Sbjct 178149 AGGGCAAGAGAAGCCAAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATC 178208
Query 80959 TCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTG 81018
|| |||||||| || || || ||||| ||||| |||||||| |||| ||||
Sbjct 178209 TCAGTGCACAAGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTG 178268
Query 81019 CAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCG 81078
|||||||||||||| ||| | ||| |||| |||||| ||| | || || ||||||
Sbjct 178269 CAAGCGTCCTTGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCG 178328
Query 81079 TCCCAAATCTC--GCGCGCCTTGACCAC-CTTGCGGAATTTGCCTTCGGC--CACATACT 81133
| ||||| || | |||| || || || |||| ||| ||| || | | ||
Sbjct 178329 TACCAAAGCTTTTGTGCGC---GAACAGTCTCGCGGCCCTTG--TTCTGCTTCTCGTAGC 178383
Query 81134 TGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAG 81193
| |||| | ||||| | |||||| | || | |||| | ||||||||||| |
Sbjct 178384 TCTCGTACAGGGCCTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCG 178443
Query 81194 GGCACATCAGGTGCCAGTCGGTGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAGGGA 81250
||||||| || ||||| || |||| ||| ||| ||||||||| |||||| |
Sbjct 178444 GGCACATGAGTGTCCAGT---TGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAA 178500
Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCG 81308
|||| |||||| ||| || ||||| |||||| ||||||| | || ||||| |||
Sbjct 178501 TCCACAGGGCGTAGAAGAGATCGCG--AGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG 178558
Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368
|| || || ||| | | || ||| || ||||||||||| || || | ||||| | ||
Sbjct 178559 CAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACC 178618
Query 81369 CTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425
||| ||||||||||| ||| || || ||||| ||| ||||||| | |||
Sbjct 178619 TGGGCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCAT 178678
Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA- 81484
|| |||| ||| | || ||||| || || |||| || || | || || |
Sbjct 178679 GGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAAT 178738
Query 81485 -CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTC 81543
| ||| ||| || || || || || | ||| || ||| ||||| ||
Sbjct 178739 GCGGTGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG 178796
Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGAC 81603
| || || ||||| || |||||||| || | |||||||| | | ||| || |||
Sbjct 178797 AGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGAC 178856
Query 81604 ATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGG 81663
|| || || | || ||| || ||||||| || || | ||||| |||| ||
Sbjct 178857 ATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTT 178916
Query 81664 TTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATA 81723
| ||||| ||| ||||| || || | ||| || ||||||||||| || | |
Sbjct 178917 TGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACA 178976
Query 81724 GCTACACGCATAAACATGTACTG-GGGCGTCTCG 81756
|| |||||||| | ||||| || ||||| ||||
Sbjct 178977 GCAACACGCATGAGCATGTGTTGTGGGCG-CTCG 179009
Score = 109 bits (120), Expect = 6e-19
Identities = 116/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| || |||||||||||||| |||||||| || ||||||||| | ||||||||||
Sbjct 177276 GTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAA 177335
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||| ||| | | || || | || |||| ||||||||| ||||||||||| ||
Sbjct 177336 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGCGACTGAGACTGGTCAATA 177395
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATT 80190
||||| ||||| || || ||||| ||||| |||
Sbjct 177396 AAAGCACCACGGTCAGCGGCCATCTCAATGATT 177428
>seq1
Length=2771824
Score = 174 bits (192), Expect = 2e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| |||||||| ||||| ||||| | || || ||||| |
Sbjct 1871513 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 1871454
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||| | || || |||||||||||||| || ||||| ||||||
Sbjct 1871453 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 1871394
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||| ||||||||||| || || || | || || || ||||||| ||
Sbjct 1871393 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 1871334
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
|||| ||||| || ||||| || | || | |||||||| || ||||||
Sbjct 1871333 ATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGGACAA 1871283
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || |||||||| || || || ||||| || ||| |
Sbjct 1871741 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 1871682
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | || || || ||||||||||| |||||||| |||||
Sbjct 1871681 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 1871622
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| | || || | ||||| || | ||||| ||
Sbjct 1871621 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 1871562
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| ||||| || || || ||| | || || ||||||||
Sbjct 1871561 ATCCAAAAGGAGTCCACACTGCACCTTGTCCTCCGCCTGCGCGGTGG 1871515
Score = 145 bits (160), Expect = 9e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||| ||||| || || || ||||||||||| ||| | || | ||| | |||
Sbjct 1872226 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGAGC 1872167
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| ||||| |||||||||||||| | || || || || |||
Sbjct 1872166 AAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 1872107
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||||| ||| ||||| | ||||| || |||| |||||||| || || |||
Sbjct 1872106 CAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGCAT 1872047
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | |||||||| || ||
Sbjct 1872046 CTCGTCCTCCGTCTTCGTGGAGG 1872024
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || |||||||||||||||||| || | ||| | || | ||| |
Sbjct 1871945 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 1871886
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || || ||||||||||| || ||||| || ||||| || || || || || || |||
Sbjct 1871885 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 1871826
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||||||||| | || ||||| | ||||| || | || ||||| ||||| || ||
Sbjct 1871825 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 1871766
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || || ||||||||
Sbjct 1871765 CTTGTCCTCCGCCTGCGCGGTGG 1871743
>seq6
Length=1662277
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||| | || || |||||||||||||| ||||| || ||||| ||||| || || || ||
Sbjct 181233 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCC 181292
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| |||||||||||||||| || || || | ||||| || |||| ||||| || ||
Sbjct 181293 GGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACC 181352
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || | ||| | ||||| || |||||
Sbjct 181353 CTCCACTTGGTCCTCCGTCTCCGTGGTGG 181381
>seq3
Length=2234992
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| || |||||||||||||| || || || || ||||| ||||||
Sbjct 1534231 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 1534172
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| || || || | ||||| || |||| ||||| ||||| || || | ||| |
Sbjct 1534171 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTC 1534112
Query 27619 CGTCTTCGCGGTGG 27632
|| ||||| |||||
Sbjct 1534111 CGCCTTCGTGGTGG 1534098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309287894720
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