Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 159 8e-34 seq6 105 2e-17 seq15 96.9 8e-15 >seq1 Length=2771824 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| ||||||||||| || || | || || | || ||| Sbjct 1871530 AGGACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 1871589 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| || || |||||||| ||||||| || |||||||| Sbjct 1871590 TCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCT 1871649 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || || ||||| ||| ||| |||||||| ||||| Sbjct 1871650 TGGATCTTCGACTTGACGTTGTCAATAGTGTC---GCTTGATTCCACCTCGAGCGTGATG 1871706 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | ||||| Sbjct 1871707 GTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || || ||||| || || | ||||| | || || Sbjct 1871758 AGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 1871817 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || ||||||||||||||||| || || ||||| | || |||||||| Sbjct 1871818 TCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCT 1871877 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || ||||| ||||||||||| || |||||||| |||||||| ||| Sbjct 1871878 TGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTC 1871937 Query 211083 TTTCCCGT 211090 || || || Sbjct 1871938 TTGCCGGT 1871945 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||||| || || || || || || || |||||||| || || | || Sbjct 1872026 TCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAG 1872085 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| |||||||| | ||| || ||||| || |||| Sbjct 1872086 GGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAAT 1872145 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || || || ||||| |||||||| |||||||| Sbjct 1872146 GCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTC 1872205 Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092 ||| ||||| |||||||| |||| Sbjct 1872206 GAGGGTGATGGTCTTTCCGGTGA 1872228 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| ||||| || |||||||| || || | || || Sbjct 1871292 ACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGT 1871351 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||||||||| || ||||| || || || || ||||||||||| | || Sbjct 1871352 TCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACC 1871411 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTC 211069 ||||||||||||||||| || || || ||||| ||||| ||| || || || Sbjct 1871412 CTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGA---CTCGACTTC 1871468 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || |||||||| || |||||||| ||||| | |||||| Sbjct 1871469 CAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513 >seq6 Length=1662277 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || || | || || | ||||| Sbjct 181366 AGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 181307 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || |||||||| ||||| |||||||| || |||| || ||||||||| Sbjct 181306 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 181247 Query 211023 TGGATCTT 211030 |||||||| Sbjct 181246 TGGATCTT 181239 >seq15 Length=714589 Score = 96.9 bits (106), Expect = 8e-15 Identities = 190/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | ||||| || || ||||| || ||||| | || Sbjct 178244 GTTCTTCTGGTTGCTCTTGCGGTTGCAA---GCGTCCTTGTAAAGCATAAAGGGGTTACC 178300 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||| | || ||| | |||||| | |||||||| || || || ||||||| Sbjct 178301 AGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAGTCTCGCG 178360 Query 178210 GGCTTT-TCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACAT 178268 | | || | || | |||||||| | | ||| || |||||||||| || ||||||| Sbjct 178361 GCCCTTGTTCTGC-TTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACAT 178419 Query 178269 CATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTC 178328 | |||| || || ||| || ||||| | ||| |||| | |||| || | || | Sbjct 178420 CGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACAC 178479 Query 178329 GTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 | |||||||||||||||| |||| | ||| ||||| Sbjct 178480 GCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAA 178516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149683144940