Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1 159 8e-34
seq6 105 2e-17
seq15 96.9 8e-15
>seq1
Length=2771824
Score = 159 bits (176), Expect = 8e-34
Identities = 165/215 (77%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| || |||||||| ||||||||||| || || | || || | || |||
Sbjct 1871530 AGGACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 1871589
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || |||||||| || || |||||||| ||||||| || ||||||||
Sbjct 1871590 TCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCT 1871649
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| || ||||| || || ||||| ||| ||| |||||||| |||||
Sbjct 1871650 TGGATCTTCGACTTGACGTTGTCAATAGTGTC---GCTTGATTCCACCTCGAGCGTGATG 1871706
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || ||||| || || | |||||
Sbjct 1871707 GTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741
Score = 154 bits (170), Expect = 3e-32
Identities = 147/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| || |||||||| || || ||||| || || | ||||| | || ||
Sbjct 1871758 AGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 1871817
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || ||||||||||||||||| || || ||||| | || ||||||||
Sbjct 1871818 TCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCT 1871877
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| || ||||| ||||||||||| || |||||||| |||||||| |||
Sbjct 1871878 TGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTC 1871937
Query 211083 TTTCCCGT 211090
|| || ||
Sbjct 1871938 TTGCCGGT 1871945
Score = 154 bits (170), Expect = 3e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | ||||| || || || || || || || |||||||| || || | ||
Sbjct 1872026 TCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAG 1872085
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||||| || ||||||||||| |||||||| | ||| || ||||| || ||||
Sbjct 1872086 GGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAAT 1872145
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||||||||| || || || ||||| |||||||| ||||||||
Sbjct 1872146 GCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTC 1872205
Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092
||| ||||| |||||||| ||||
Sbjct 1872206 GAGGGTGATGGTCTTTCCGGTGA 1872228
Score = 141 bits (156), Expect = 2e-28
Identities = 167/225 (74%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| ||||| ||||| || |||||||| || || | || ||
Sbjct 1871292 ACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGT 1871351
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || |||||||||||||| || ||||| || || || || ||||||||||| | ||
Sbjct 1871352 TCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACC 1871411
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTC 211069
||||||||||||||||| || || || ||||| ||||| ||| || || ||
Sbjct 1871412 CTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGA---CTCGACTTC 1871468
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || || |||||||| || |||||||| ||||| | ||||||
Sbjct 1871469 CAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
>seq6
Length=1662277
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| || || ||||| || |||||||| || || | || || | |||||
Sbjct 181366 AGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 181307
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || |||||||| ||||| |||||||| || |||| || |||||||||
Sbjct 181306 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 181247
Query 211023 TGGATCTT 211030
||||||||
Sbjct 181246 TGGATCTT 181239
>seq15
Length=714589
Score = 96.9 bits (106), Expect = 8e-15
Identities = 190/277 (69%), Gaps = 8/277 (3%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||| ||||||||||| | ||||| || || ||||| || ||||| | ||
Sbjct 178244 GTTCTTCTGGTTGCTCTTGCGGTTGCAA---GCGTCCTTGTAAAGCATAAAGGGGTTACC 178300
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||| | || ||| | |||||| | |||||||| || || || |||||||
Sbjct 178301 AGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGTGCGCGAACAGTCTCGCG 178360
Query 178210 GGCTTT-TCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACAT 178268
| | || | || | |||||||| | | ||| || |||||||||| || |||||||
Sbjct 178361 GCCCTTGTTCTGC-TTCTCGTAGCTCTCGTACAGGGCCTCGAATTCTTCACCGTAGACAT 178419
Query 178269 CATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTC 178328
| |||| || || ||| || ||||| | ||| |||| | |||| || | || |
Sbjct 178420 CGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACAC 178479
Query 178329 GTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
| |||||||||||||||| |||| | ||| |||||
Sbjct 178480 GCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAA 178516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159149683144940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |