Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq1 87.8 2e-12
>seq1
Length=2771824
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || || | || ||||| |||| ||
Sbjct 1871304 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 1871363
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || || |||||||||||||| | || | | ||| ||||||
Sbjct 1871364 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 1871423
Query 39195 GATTTT---CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251
||| || || || | |||| | ||| ||||| ||||| || |||| || || |
Sbjct 1871424 GATCTTGGACT-TTACATTGTCG--ATCGTGTCGCTAGACTCGACTTCCAATGTAATGGT 1871480
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||| || || || || |||||||| |||||
Sbjct 1871481 CTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| ||||| || || || |||| || || || |||| || | |||
Sbjct 1871539 TGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCAACTGC 1871598
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || || || || |||||||| ||||| | || | | ||| ||||| ||| |||
Sbjct 1871599 TTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTC 1871658
Query 39202 TGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
|||| ||| | || || ||||| || ||||| || | |||||| | || || ||
Sbjct 1871659 GACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGT 1871717
Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284
||| || || || |||||||||||
Sbjct 1871718 CAGGGTCTTGACGAAGATTTGCAT 1871741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429544783326428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |