Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq15 147 3e-30
>seq15
Length=714589
Score = 147 bits (162), Expect = 3e-30
Identities = 584/905 (65%), Gaps = 22/905 (2%)
Strand=Plus/Plus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|| ||||| || || | ||||| | | ||||| || || ||||| ||||| | || |
Sbjct 178398 TCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTC 178457
Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639
|| | || | || | || || ||||| ||||| ||||| ||||| || || ||
Sbjct 178458 CAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAG 178517
Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699
||||| || | | || || || || ||||| || || ||||| | |
Sbjct 178518 AGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAG 178577
Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759
| |||| |||||||| || || || || || | |||| || || || || || |||
Sbjct 178578 ACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCC 178637
Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819
|| || | ||| | |||||||| || || || | | ||| ||||| | |||||||||
Sbjct 178638 TGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGAT 178697
Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT--ATTACTAATAGATAGGC 76877
|| || || || ||| || || ||| |||||||| | | | | ||||
Sbjct 178698 GTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGGC 178755
Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937
| || || || || | || ||||| | |||||| || | |||||| || ||||| |
Sbjct 178756 CAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGT 178815
Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA-ACAGTT 76996
| || || || ||| |||||| | || || || |||||||| || ||| ||
Sbjct 178816 CGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTG-TGGTGATGGTGTG 178874
Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTA 77055
|| || || ||||| || || || || || ||||| | |||| ||| | |||| | |||
Sbjct 178875 CCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTA 178933
Query 77056 TGTTTCAATAACTGCTTCTATATCCCAT--TGATGAATTCCTACAGCGACACGCATCAAC 77113
|| || || | ||||| || ||| ||||| || ||||| |||||||| | |
Sbjct 178934 GGTCTCGATGGC--CTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGC 178991
Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173
|| || || || || || | ||| ||||| | | ||||| || |
Sbjct 178992 ATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGCTCGAGT 179051
Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGT 77233
|| || |||||||| | | ||| ||||| | ||||| | ||| |||| || ||
Sbjct 179052 GTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAGC 179111
Query 77234 TTGTCCTTATATTTGGTAACAATAT--CCATG-ACA-GTGGT-AGAAATAATTGGAGATC 77288
| ||| | | || || ||| || || | | ||| | ||| || || || ||
Sbjct 179112 TCGTCTTGGT-----GTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGTC 179166
Query 77289 GTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtt 77348
|||| || || || || |||||||| | | ||||| | ||| ||| | |
Sbjct 179167 TCTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCT 179226
Query 77349 tttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAG 77408
| || || | |||||| ||||| ||||| || || | ||||| || ||||| ||||| |
Sbjct 179227 TCTTGGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTCGG 179286
Query 77409 GATGT 77413
|||||
Sbjct 179287 GATGT 179291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712933009777920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |