Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 147 3e-30 >seq15 Length=714589 Score = 147 bits (162), Expect = 3e-30 Identities = 584/905 (65%), Gaps = 22/905 (2%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 || ||||| || || | ||||| | | ||||| || || ||||| ||||| | || | Sbjct 178398 TCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTC 178457 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || | || | || | || || ||||| ||||| ||||| ||||| || || || Sbjct 178458 CAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAG 178517 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| || | | || || || || ||||| || || ||||| | | Sbjct 178518 AGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAG 178577 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | |||| |||||||| || || || || || | |||| || || || || || ||| Sbjct 178578 ACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCC 178637 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | ||| | |||||||| || || || | | ||| ||||| | ||||||||| Sbjct 178638 TGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGAT 178697 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT--ATTACTAATAGATAGGC 76877 || || || || ||| || || ||| |||||||| | | | | |||| Sbjct 178698 GTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGGC 178755 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || || || | || ||||| | |||||| || | |||||| || ||||| | Sbjct 178756 CAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGT 178815 Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA-ACAGTT 76996 | || || || ||| |||||| | || || || |||||||| || ||| || Sbjct 178816 CGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTG-TGGTGATGGTGTG 178874 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTA 77055 || || || ||||| || || || || || ||||| | |||| ||| | |||| | ||| Sbjct 178875 CCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTA 178933 Query 77056 TGTTTCAATAACTGCTTCTATATCCCAT--TGATGAATTCCTACAGCGACACGCATCAAC 77113 || || || | ||||| || ||| ||||| || ||||| |||||||| | | Sbjct 178934 GGTCTCGATGGC--CTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGC 178991 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || || || | ||| ||||| | | ||||| || | Sbjct 178992 ATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGCTCGAGT 179051 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGT 77233 || || |||||||| | | ||| ||||| | ||||| | ||| |||| || || Sbjct 179052 GTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTGAGC 179111 Query 77234 TTGTCCTTATATTTGGTAACAATAT--CCATG-ACA-GTGGT-AGAAATAATTGGAGATC 77288 | ||| | | || || ||| || || | | ||| | ||| || || || || Sbjct 179112 TCGTCTTGGT-----GTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGTC 179166 Query 77289 GTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtt 77348 |||| || || || || |||||||| | | ||||| | ||| ||| | | Sbjct 179167 TCTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACAACGAGAGAGAATTGCT 179226 Query 77349 tttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAG 77408 | || || | |||||| ||||| ||||| || || | ||||| || ||||| ||||| | Sbjct 179227 TCTTGGTCTGCTTGTGGAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTCGG 179286 Query 77409 GATGT 77413 ||||| Sbjct 179287 GATGT 179291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933009777920