Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1 100 7e-16
>seq1
Length=2771824
Score = 100 bits (110), Expect = 7e-16
Identities = 155/218 (71%), Gaps = 10/218 (5%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| || || || ||||| |||||||||||||| |||| | ||| | || ||
Sbjct 1871529 GAGGACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTC 1871588
Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||| | ||||| ||||||||||| || | ||| ||||||| | || || |||||
Sbjct 1871589 TTCCAACTGCTTT--CCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTG 1871646
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTA 152066
||||| || || ||||| | || | |||| ||| || || || || ||
Sbjct 1871647 TCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGA---TTCCACCTCGAGCGTG 1871703
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| || || ||||| ||||||| |||||
Sbjct 1871704 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741
Score = 100 bits (110), Expect = 7e-16
Identities = 138/191 (72%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| || || || ||||| || || |||||||| |||| | || | || ||
Sbjct 1871757 GAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTC 1871816
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| || ||||| |||||||||||||| | ||||| |||| | ||| || |||||
Sbjct 1871817 CTCGAGTTGCTTT--CCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTG 1871874
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
||||| || ||| ||||| | || | | |||| || ||| || |||||||| ||
Sbjct 1871875 TCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATG 1871934
Query 152070 GTTTTGCCCGT 152080
|| ||||| ||
Sbjct 1871935 GTCTTGCCGGT 1871945
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||||||||| || ||||||||||| || | | |||| || ||||| |
Sbjct 1871307 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 1871365
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || ||||| || || | ||||||||| | | ||| || ||||| || || |
Sbjct 1871366 GCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGA 1871425
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| | || | |||| | ||| ||||| | ||||| || || |
Sbjct 1871426 TCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTC 1871485
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || |||||||| || |||| ||||||
Sbjct 1871486 CGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| || ||||| || || ||||||||||| |||| | || | |||||
Sbjct 1872038 GAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 1872097
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| | | ||||||||| | | || || ||||| ||
Sbjct 1872098 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 1872157
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || |||||| | || | |||| ||| ||| || || || || || ||
Sbjct 1872158 CTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGT 1872217
Query 152072 TTTGCCCGTGA 152082
|| || ||||
Sbjct 1872218 CTTTCCGGTGA 1872228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153818493800676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |