Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 >seq1 Length=2771824 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||||||||||||||| |||| ||| || |||| ||| Sbjct 1871533 ACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCC 1871592 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| ||||| ||||| | |||||| || || | ||| | ||| ||||| || Sbjct 1871593 AACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1871652 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | || |||||| ||||||||||| | ||| || ||||| Sbjct 1871653 ATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTG 1871712 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| |||||||||||||| Sbjct 1871713 CCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| || | ||| || |||| || Sbjct 1871304 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 1871363 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || || || || | ||||||||| || | ||| | ||| ||||| ||| Sbjct 1871364 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 1871423 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | || |||||| || || || |||| ||||| ||| Sbjct 1871424 GATCTTGGACTTTACATTGT--CGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTC 1871481 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || ||||| ||||| Sbjct 1871482 TTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| |||| || ||| | || || |||||||| ||||| ||| Sbjct 1872060 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAG 1872119 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 ||||| |||||||| |||| || | || ||||| ||| ||||| ||| || || Sbjct 1872120 ATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTG 1872179 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 | | || ||||| | || || ||||| | || || |||||||| |||| Sbjct 1872180 T--CGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGTGA 1872228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989715568252