Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1 143 2e-29
>seq1
Length=2771824
Score = 143 bits (158), Expect = 2e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || ||| |||||||||||||||||| |||| ||| || |||| |||
Sbjct 1871533 ACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCC 1871592
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| |||||| ||||| ||||| | |||||| || || | ||| | ||| ||||| ||
Sbjct 1871593 AACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1871652
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||| | | | || |||||| ||||||||||| | ||| || |||||
Sbjct 1871653 ATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTG 1871712
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||||||| ||||||||||||||
Sbjct 1871713 CCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741
Score = 116 bits (128), Expect = 3e-21
Identities = 154/212 (73%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || || |||||| ||||||||||| || | ||| || |||| ||
Sbjct 1871304 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 1871363
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| || || || || | ||||||||| || | ||| | ||| ||||| |||
Sbjct 1871364 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 1871423
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | || |||||| || || || |||| ||||| |||
Sbjct 1871424 GATCTTGGACTTTACATTGT--CGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTC 1871481
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || ||||| || ||||| |||||
Sbjct 1871482 TTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/171 (73%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| ||||||||||| |||| || ||| | || || |||||||| ||||| |||
Sbjct 1872060 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAG 1872119
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264
||||| |||||||| |||| || | || ||||| ||| ||||| ||| || ||
Sbjct 1872120 ATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTG 1872179
Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315
| | || ||||| | || || ||||| | || || |||||||| ||||
Sbjct 1872180 T--CGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGTGA 1872228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989715568252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |