Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1 152 1e-31
seq6 104 6e-17
seq3 91.5 4e-13
>seq1
Length=2771824
Score = 152 bits (168), Expect = 1e-31
Identities = 160/209 (77%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980
||||| ||||| || || || || || || || ||||| |||||||||||| |||
Sbjct 1871738 CAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAA---TCAAGC 1871682
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| || || |||||||| ||||| || ||||| || || || |||||||||||
Sbjct 1871681 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 1871622
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| || || |||||||||||||| ||| | ||||| || | ||||| |||| || |||
Sbjct 1871621 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 1871562
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
||||||| || || |||||||| |||||
Sbjct 1871561 ATCCAAAAGGAGTCCACACTGCACCTTGT 1871533
Score = 145 bits (160), Expect = 2e-29
Identities = 143/185 (77%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || ||||| || ||||| || || ||||||||||| |||||||| |
Sbjct 1871945 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 1871886
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| || ||||| || || ||||||||||| |||||||| |||||||||||||||||
Sbjct 1871885 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 1871826
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||||| || || | || || |||| || ||| | || || || || ||||||||
Sbjct 1871825 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 1871766
Query 178125 CTTGT 178129
|||||
Sbjct 1871765 CTTGT 1871761
Score = 134 bits (148), Expect = 3e-26
Identities = 142/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| ||||| || |||||||||||||| || || ||||| ||||| || |||||
Sbjct 1872228 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGA 1872169
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| |||||||| || || || || || |||||||| || | ||||||||||| |
Sbjct 1872168 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 1872109
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || ||||| | || || |||| || ||| |||| || ||||| || ||||
Sbjct 1872108 AGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGC 1872049
Query 178123 ATCTTGT 178129
|||| ||
Sbjct 1872048 ATCTCGT 1872042
>seq6
Length=1662277
Score = 104 bits (114), Expect = 6e-17
Identities = 107/139 (77%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| |||||||| ||||| |||||||| || || || || |||||||| || || ||
Sbjct 181224 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 181283
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109
|||||||||||||| || ||||| ||||| | ||||| |||| || ||| |||| ||
Sbjct 181284 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 181343
Query 178110 GAATCAACACTGCATCTTG 178128
|| ||||| || || ||||
Sbjct 181344 GAGTCAACCCTCCA-CTTG 181361
>seq3
Length=2234992
Score = 91.5 bits (100), Expect = 4e-13
Identities = 90/115 (78%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| || || || || ||||||||||| || || |||||||||||||| ||||||||
Sbjct 1534231 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 1534172
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
||||| | |||||| | || || ||| |||| || || || || || || ||||
Sbjct 1534171 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCA-CTTG 1534118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203728794042264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |