Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq6 104 6e-17 seq3 91.5 4e-13 >seq1 Length=2771824 Score = 152 bits (168), Expect = 1e-31 Identities = 160/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 ||||| ||||| || || || || || || || ||||| |||||||||||| ||| Sbjct 1871738 CAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAA---TCAAGC 1871682 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || |||||||| ||||| || ||||| || || || ||||||||||| Sbjct 1871681 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 1871622 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||||||||| ||| | ||||| || | ||||| |||| || ||| Sbjct 1871621 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 1871562 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| || || |||||||| ||||| Sbjct 1871561 ATCCAAAAGGAGTCCACACTGCACCTTGT 1871533 Score = 145 bits (160), Expect = 2e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| || ||||| || || ||||||||||| |||||||| | Sbjct 1871945 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 1871886 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| || || ||||||||||| |||||||| ||||||||||||||||| Sbjct 1871885 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 1871826 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| || || | || || |||| || ||| | || || || || |||||||| Sbjct 1871825 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 1871766 Query 178125 CTTGT 178129 ||||| Sbjct 1871765 CTTGT 1871761 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || |||||||||||||| || || ||||| ||||| || ||||| Sbjct 1872228 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGA 1872169 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || || || || |||||||| || | ||||||||||| | Sbjct 1872168 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 1872109 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || || |||| || ||| |||| || ||||| || |||| Sbjct 1872108 AGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGC 1872049 Query 178123 ATCTTGT 178129 |||| || Sbjct 1872048 ATCTCGT 1872042 >seq6 Length=1662277 Score = 104 bits (114), Expect = 6e-17 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| |||||||| || || || || |||||||| || || || Sbjct 181224 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 181283 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 |||||||||||||| || ||||| ||||| | ||||| |||| || ||| |||| || Sbjct 181284 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 181343 Query 178110 GAATCAACACTGCATCTTG 178128 || ||||| || || |||| Sbjct 181344 GAGTCAACCCTCCA-CTTG 181361 >seq3 Length=2234992 Score = 91.5 bits (100), Expect = 4e-13 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || ||||||||||| || || |||||||||||||| |||||||| Sbjct 1534231 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 1534172 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||| | |||||| | || || ||| |||| || || || || || || |||| Sbjct 1534171 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCA-CTTG 1534118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728794042264