Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq5 154 3e-32
>seq5
Length=1540376
Score = 154 bits (170), Expect = 3e-32
Identities = 569/872 (65%), Gaps = 31/872 (4%)
Strand=Plus/Minus
Query 229783 TGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTT--CCTCTGA 229840
||| | |||||||||||||| | ||| ||||||||||| | ||||| | |||||
Sbjct 776247 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 776188
Query 229841 ACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAAAC 229900
| | ||| | ||||||| || ||||| || ||||| || |||||| |
Sbjct 776187 AAG--GACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCC 776130
Query 229901 ACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCT-GCAGACCAA- 229958
|| |||| | || ||||||| ||||||||| ||||| | || || || | || | |
Sbjct 776129 ACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGAT 776070
Query 229959 -CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCA 230017
|| ||| | ||||| | || |||||||| || || | || ||||| | |
Sbjct 776069 TCTCTAGCG---AAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGA 776013
Query 230018 ACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGC 230077
|| | || || || || ||||||| |||||| | || || | |||||
Sbjct 776012 TGGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACA--TACATCAG-CGAGC 775956
Query 230078 --AAGAACGGAACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGG 230134
||| | | | | | || || | ||||| || |||||||| | | || ||||
Sbjct 775955 CCAAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGG 775896
Query 230135 CAAAGTGGGCTCAGAAATGG--CTAGAACCTGGTAAATCG---TTTGCCGAGCGTCTCGT 230189
| | ||||| | | |||| || || | || || || ||| | || || ||
Sbjct 775895 CCGACTGGGCCCTGCGATGGATCTCCGACAAG--AACTCCACATTCGCCAACCGCCTTGT 775838
Query 230190 CGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCT 230249
|| | | |||||| ||||| | || ||| |||| | ||||||| |||||
Sbjct 775837 TGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCT 775778
Query 230250 GCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGA 230309
||| ||| ||||||| || || | || |||||| ||||| || |||||
Sbjct 775777 CAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGA 775718
Query 230310 GGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCAT 230368
||| | || || | | |||| | ||| | | || ||| ||||||||| |||
Sbjct 775717 GGGCATGCA-CACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGC--CCAG 775661
Query 230369 TCGAGA--CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTG 230426
| ||| | |||| | ||||| || ||||| || || | || |||||||| | |
Sbjct 775660 CCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAG 775601
Query 230427 TGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCG 230485
||||| | ||||| ||| || | |||||||||||| || ||| | || |||||||
Sbjct 775600 CGACGCACTACCATG-CGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCG 775542
Query 230486 AATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGA 230545
| ||||| || ||||| | | | || || || ||| || || ||| || | | |
Sbjct 775541 AGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCA 775482
Query 230546 ACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGC 230605
||||||| | || |||||| |||||| || || ||||||||||||||||| ||||
Sbjct 775481 ACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGC 775422
Query 230606 GTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
| ||| | ||||| |||| | ||||||| |||
Sbjct 775421 GCGTCGGCGACTACCAGAAGGCTGGTGTCATG 775390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057822929283770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |