Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5 154 3e-32 >seq5 Length=1540376 Score = 154 bits (170), Expect = 3e-32 Identities = 569/872 (65%), Gaps = 31/872 (4%) Strand=Plus/Minus Query 229783 TGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTT--CCTCTGA 229840 ||| | |||||||||||||| | ||| ||||||||||| | ||||| | ||||| Sbjct 776247 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 776188 Query 229841 ACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAAAC 229900 | | ||| | ||||||| || ||||| || ||||| || |||||| | Sbjct 776187 AAG--GACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCC 776130 Query 229901 ACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCT-GCAGACCAA- 229958 || |||| | || ||||||| ||||||||| ||||| | || || || | || | | Sbjct 776129 ACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGAT 776070 Query 229959 -CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCA 230017 || ||| | ||||| | || |||||||| || || | || ||||| | | Sbjct 776069 TCTCTAGCG---AAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGA 776013 Query 230018 ACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGC 230077 || | || || || || ||||||| |||||| | || || | ||||| Sbjct 776012 TGGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACA--TACATCAG-CGAGC 775956 Query 230078 --AAGAACGGAACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGG 230134 ||| | | | | | || || | ||||| || |||||||| | | || |||| Sbjct 775955 CCAAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGG 775896 Query 230135 CAAAGTGGGCTCAGAAATGG--CTAGAACCTGGTAAATCG---TTTGCCGAGCGTCTCGT 230189 | | ||||| | | |||| || || | || || || ||| | || || || Sbjct 775895 CCGACTGGGCCCTGCGATGGATCTCCGACAAG--AACTCCACATTCGCCAACCGCCTTGT 775838 Query 230190 CGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCT 230249 || | | |||||| ||||| | || ||| |||| | ||||||| ||||| Sbjct 775837 TGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCT 775778 Query 230250 GCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGA 230309 ||| ||| ||||||| || || | || |||||| ||||| || ||||| Sbjct 775777 CAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGA 775718 Query 230310 GGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCAT 230368 ||| | || || | | |||| | ||| | | || ||| ||||||||| ||| Sbjct 775717 GGGCATGCA-CACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGC--CCAG 775661 Query 230369 TCGAGA--CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTG 230426 | ||| | |||| | ||||| || ||||| || || | || |||||||| | | Sbjct 775660 CCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAG 775601 Query 230427 TGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCG 230485 ||||| | ||||| ||| || | |||||||||||| || ||| | || ||||||| Sbjct 775600 CGACGCACTACCATG-CGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCG 775542 Query 230486 AATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGA 230545 | ||||| || ||||| | | | || || || ||| || || ||| || | | | Sbjct 775541 AGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCA 775482 Query 230546 ACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGC 230605 ||||||| | || |||||| |||||| || || ||||||||||||||||| |||| Sbjct 775481 ACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGC 775422 Query 230606 GTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 | ||| | ||||| |||| | ||||||| ||| Sbjct 775421 GCGTCGGCGACTACCAGAAGGCTGGTGTCATG 775390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822929283770