Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq16 145 9e-30
>seq16
Length=840418
Score = 145 bits (160), Expect = 9e-30
Identities = 583/904 (64%), Gaps = 18/904 (2%)
Strand=Plus/Plus
Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009
||| || || || || | |||| | | | ||||| || || | ||| ||||||| |
Sbjct 26907 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 26966
Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069
||| | |||| || | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 26967 CCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 27026
Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129
||||| | | | ||||| || || ||||| || || ||||| ||||
Sbjct 27027 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAA 27085
Query 54130 A-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188
| | |||| ||||| || || | ||| |||| | | || || || ||||| || |
Sbjct 27086 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 27145
Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248
|||| || | || | ||| ||||| || || || | | ||| ||||| | |||||| |
Sbjct 27146 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAG 27205
Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 54306
||| || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 27206 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AG 27263
Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366
|| || || || || | || ||||| || || || || | || || || |||||
Sbjct 27264 GCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCC 27323
Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTA 54424
|| || || || ||| |||||| | || || || |||||| |||||| |
Sbjct 27324 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GT 27381
Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATT 54483
|| ||||| || || || || || || ||||| || || | |||| ||| | |||| |
Sbjct 27382 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TC 27440
Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATT 54541
||| |||||||| || ||| || ||| | ||||| || || || ||||||||
Sbjct 27441 GTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATG 27498
Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601
| |||||| || || | || ||| |||| |||||| || | || || |||
Sbjct 27499 AGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCG 27558
Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTG 54661
| || || |||||||| | | ||| ||||| || ||||| | ||| | ||||||
Sbjct 27559 AGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTG 27618
Query 54662 AGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGG-AGAATG 54720
|| | || | | || | | || | | | | || || || || | |
Sbjct 27619 AGCTCGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGTCTC 27678
Query 54721 TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGttt 54780
||| || || || || ||||||||||| | | ||| | | ||| | ||| | ||
Sbjct 27679 TTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACCACGAGAGAGAATTGCTT 27737
Query 54781 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 54840
||||| | ||||| ||||||||||| || || | || || || || || || || ||
Sbjct 27738 CTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTCGGG 27797
Query 54841 ATGT 54844
||||
Sbjct 27798 ATGT 27801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721013699920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |