Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq10 113 4e-20
seq14 109 5e-19
seq13 102 7e-17
>seq10
Length=1117896
Score = 113 bits (124), Expect = 4e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||| | ||| ||||| || ||||||||||| ||| || ||||| |||||||| ||
Sbjct 915039 GTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTG 914980
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
||||| ||| |||| || || |||||||| ||||| ||||||||||||||| || ||
Sbjct 914979 CTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTT 914920
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
| || || | |||| |||||| | ||| ||||| | || | || ||||||||
Sbjct 914919 TGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGT 914860
Query 118715 CA 118716
||
Sbjct 914859 CA 914858
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||||| |||||||| || || |||||||| || | || || || ||
Sbjct 915501 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 915442
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || |||||| |||||||||||||||| || ||||| || |||||||||||
Sbjct 915441 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 915382
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||||| || |||||| || | || | || ||
Sbjct 915381 GATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTT 915322
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||||| || || || ||||||||
Sbjct 915321 TCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
|||||| || | ||||||||| ||||| |||||||| || | ||| || || ||
Sbjct 915273 CACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTC 915214
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| ||||| ||| ||||||||||||| || || ||||| || |||||||||||
Sbjct 915213 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 915154
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707
||| || || || | || | ||||| | || | || ||||||| || | || |
Sbjct 915153 AATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGAT-TCCACCTCGAGCGTGATGGTCT 915095
Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| ||||| || || || || || |||||
Sbjct 915094 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
||||| || || || |||||||| ||| || ||||| |||||| ||||| || ||
Sbjct 914751 GTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCG 914692
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||| || || || |||||||||||||| || || ||
Sbjct 914691 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 914632
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| | |||| ||||| | | ||| ||||||| ||| | || || |||||
Sbjct 914631 ACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 914579
>seq14
Length=985265
Score = 109 bits (120), Expect = 5e-19
Identities = 95/118 (81%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| || | |||||| |||||||
Sbjct 862974 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCG 862915
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
||||| ||||| ||| |||| ||||||||||| || || || ||||||||||||||||
Sbjct 862914 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 862857
>seq13
Length=1001457
Score = 102 bits (112), Expect = 7e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| ||| || |||||| |||||||
Sbjct 407208 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCG 407267
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || ||||| ||| |||| || ||||| || || || || ||||||||||||||
Sbjct 407268 AGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 407323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433829982302668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |