Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10 113 4e-20 seq14 109 5e-19 seq13 102 7e-17 >seq10 Length=1117896 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| ||||| || ||||||||||| ||| || ||||| |||||||| || Sbjct 915039 GTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTG 914980 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| ||| |||| || || |||||||| ||||| ||||||||||||||| || || Sbjct 914979 CTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTT 914920 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | || || | |||| |||||| | ||| ||||| | || | || |||||||| Sbjct 914919 TGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGT 914860 Query 118715 CA 118716 || Sbjct 914859 CA 914858 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| |||||||| || || |||||||| || | || || || || Sbjct 915501 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 915442 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||||||||||||||| || ||||| || ||||||||||| Sbjct 915441 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 915382 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| || |||||| || | || | || || Sbjct 915381 GATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTT 915322 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || |||||||| Sbjct 915321 TCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||||||||| ||||| |||||||| || | ||| || || || Sbjct 915273 CACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTC 915214 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| ||||| ||| ||||||||||||| || || ||||| || ||||||||||| Sbjct 915213 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 915154 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || || || | || | ||||| | || | || ||||||| || | || | Sbjct 915153 AATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGAT-TCCACCTCGAGCGTGATGGTCT 915095 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| || || || || || ||||| Sbjct 915094 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || |||||||| ||| || ||||| |||||| ||||| || || Sbjct 914751 GTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCG 914692 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || |||||||||||||| || || || Sbjct 914691 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 914632 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| ||||| | | ||| ||||||| ||| | || || ||||| Sbjct 914631 ACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 914579 >seq14 Length=985265 Score = 109 bits (120), Expect = 5e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| || | |||||| ||||||| Sbjct 862974 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCG 862915 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||| ||||| ||| |||| ||||||||||| || || || |||||||||||||||| Sbjct 862914 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 862857 >seq13 Length=1001457 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| || |||||| ||||||| Sbjct 407208 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCG 407267 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||||| ||| |||| || ||||| || || || || |||||||||||||| Sbjct 407268 AGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 407323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829982302668