Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10 145 9e-30 >seq10 Length=1117896 Score = 145 bits (160), Expect = 9e-30 Identities = 166/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | ||| ||||||||| || ||||| || | ||||| || | Sbjct 915279 ACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCC 915220 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| || ||||| ||||| ||||| ||||| | || | | |||||| Sbjct 915219 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 915160 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | || |||||||| |||||||| |||| |||| Sbjct 915159 GTCC-TGAATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTG 915102 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| ||||| || || ||||| || ||||||||||| Sbjct 915101 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 122 bits (134), Expect = 1e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||||||||| || | | ||| | |||||| || | || |||||| || || |||| Sbjct 915526 CCTATTGTCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGT 915467 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || | || || || |||| || ||||||||||||||||| ||||| |||||||||| Sbjct 915466 AGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGT 915407 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 43128 | | || | | |||||||||| ||| || || | | | | ||||||||| | Sbjct 915406 CCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGG 915347 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || | || ||||| || || || || ||||| || ||||| ||||| Sbjct 915346 ACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817035330120