Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq10 145 9e-30
>seq10
Length=1117896
Score = 145 bits (160), Expect = 9e-30
Identities = 166/218 (76%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||||||| | ||| ||||||||| || ||||| || | ||||| || |
Sbjct 915279 ACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCC 915220
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || | |||||| || ||||| ||||| ||||| ||||| | || | | ||||||
Sbjct 915219 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 915160
Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTG 43145
|||| ||| | || | |||| ||| | || |||||||| |||||||| |||| ||||
Sbjct 915159 GTCC-TGAATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTG 915102
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| ||||| || || ||||| || |||||||||||
Sbjct 915101 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 122 bits (134), Expect = 1e-22
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008
|||||||||| || | | ||| | |||||| || | || |||||| || || ||||
Sbjct 915526 CCTATTGTCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGT 915467
Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068
| || | || || || |||| || ||||||||||||||||| ||||| ||||||||||
Sbjct 915466 AGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGT 915407
Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 43128
| | || | | |||||||||| ||| || || | | | | ||||||||| |
Sbjct 915406 CCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGG 915347
Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || || | || ||||| || || || || ||||| || ||||| |||||
Sbjct 915346 ACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817035330120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |