Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq10 145 5e-30 >seq10 Length=1117896 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | ||||||| ||| | |||| || ||||| ||||||||||| || Sbjct 915519 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 915460 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| |||| |||||| || ||||| ||||| ||||||||||| || Sbjct 915459 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 915400 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||||| || | | |||| ||| | || ||||| Sbjct 915399 AATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGAC 915340 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || ||||| ||||| || || ||||||||||| Sbjct 915339 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || || || ||||||||||| || || |||| |||| Sbjct 915275 AGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCT 915216 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| ||||| ||||| ||||| || | | ||||||||| Sbjct 915215 TCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC 915156 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | ||||| || || | ||||||||| Sbjct 915155 TGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTC 915096 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || ||||| ||||| Sbjct 915095 TTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 89.7 bits (98), Expect = 3e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 ||| ||||| |||||||||||||||| | || || | || || | ||||||||| |||| Sbjct 914746 TTCCTTCTGGATGTTGTAGTCGGACAAGGTG-CGACCATCCTCAAGCTGCTTGCCGGCGA 914688 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 | || | ||||||||||| ||| | || ||||||||| ||||| ||| | || Sbjct 914687 AGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACAT 914628 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367 | | || | |||| || || || || | |||||||| || ||||||| Sbjct 914627 TGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCGGTGA 914577 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| || || || ||||| ||||||||||||||| Sbjct 915062 CCACCACGCAGGCGGAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGAC 915003 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| || || || ||||| || || Sbjct 915002 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 914943 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | | | | || | |||| || || || Sbjct 914942 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 914883 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| |||||||| Sbjct 914882 TCAAGAGTGATGGTCTTGCCGGT 914860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071688942240