Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq16 104 5e-17 >seq16 Length=840418 Score = 104 bits (114), Expect = 5e-17 Identities = 436/685 (64%), Gaps = 19/685 (3%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||||| |||||| || || || || ||||||||| || | |||||| Sbjct 27584 TACCAGTTCTTTGGTTTCAAGACACTCGAACGTTCATATCTCCTCCGCATAAACGGCAAG 27525 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| || || || |||||| | ||||| || ||||| || |||||| |||||| Sbjct 27524 GTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGATGAC 27465 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || |||| | ||||||| ||| | ||| | || | | ||||| ||| | Sbjct 27464 ATCGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCG 27405 Query 248998 CCGACGCTCTTCAACGCCGGTAC--CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 |||||| | |||||||| || || | ||| || || || || ||||| || | | Sbjct 27404 CCGACGTTGTTCAACGCGGGCACACCATCACCA--CAAATGTCGTCATGCTTCCTCATCG 27347 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGA 249112 |||| | || ||| ||||||||||||| ||||| || | |||| ||| || Sbjct 27346 ACATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCA---AGACCTGTGCGTTGA 27290 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172 | || || ||| ||||| || || ||| ||| | ||| || || | || || | Sbjct 27289 TCTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCAT 27230 Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232 ||||| || || || || | ||||| || | ||| | || || | | Sbjct 27229 ACATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACA 27170 Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGT 249286 ||| || | | || |||||| || ||| | | || | |||||||| | Sbjct 27169 ACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTCGCCATCT 27113 Query 249287 ATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCA 249346 | | || |||||||| || | || | ||||| ||| || |||||| |||||| Sbjct 27112 ACCTCGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCA 27053 Query 249347 ACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGC 249406 | ||| | | || || || |||||||||| |||||| | | ||| | |||||| Sbjct 27052 AGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGA 26993 Query 249407 GCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCA 249466 || || | | | ||||| | ||||| || | | ||| ||| ||| | |||| Sbjct 26992 AGCGTGTTCAAGACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCG 26933 Query 249467 TCGATCTACACGGCGCCGACTTCGA 249491 |||| | |||| | || ||||| Sbjct 26932 CCGATGTCTACGGTGAAGAATTCGA 26908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765313147072