Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq16 354 7e-93 seq5 167 2e-36 seq10 116 3e-21 >seq16 Length=840418 Score = 354 bits (392), Expect = 7e-93 Identities = 1206/1857 (65%), Gaps = 46/1857 (2%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || ||||| |||||||| ||||| ||||| |||||| | ||| || || | Sbjct 25784 TGGTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAG 25843 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 | || | || || | | ||| | ||||| | || | ||||||| ||| || | Sbjct 25844 AAGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAA 25903 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || || |||||||| | || | | ||| ||| || ||||| |||| Sbjct 25904 TGAAAGCACCACGGTCAGCGGCCATCTCAATGATCCTTCGCTGCGAGATCTCCCAGACGG 25963 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTA 22381 ||||||| || | | |||| || || | | || |||| | || || | Sbjct 25964 TCTTGTAAAGGGTCTTTGTCTCCTCAGGGAT-GTTGGGAATCCTGGCAATCGAACCTCCA 26022 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | || ||||| ||| ||| || | || ||| Sbjct 26023 TCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTG 26082 Query 22442 ACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | || ||| |||| || || || ||||| || | | ||| ||||| || |||| Sbjct 26083 AGCAACCATG--GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGT 26140 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 |||| ||| | || ||||| | || ||||| ||||| ||||| | || || || || | Sbjct 26141 TGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTG 26200 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCA 22619 |||| || || | || |||||||| | | ||||||| | ||| || ||| || Sbjct 26201 GCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAG 26260 Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACAC 22677 || ||||||||| || || | || || ||||| |||||||||||| || | | || Sbjct 26261 ACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATT---CCACATATCGTACTGGAGGATAC 26317 Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTC 22737 | | || || | | | |||||||| || | ||| |||||| | | || | || Sbjct 26318 CCTGGGATACGG-GAGAT-CCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTC 26375 Query 22738 GCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTCG- 22795 ||| | | || | | || || ||||||||||||| |||| | ||| Sbjct 26376 GCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTT 26435 Query 22796 -GCGGCGGC-GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853 || || | ||| ||| | || | || | | ||| || || || | ||| | Sbjct 26436 AGCTTCGTCTGAC----TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTT 26491 Query 22854 GAACGCCTATACCGATCGGTCGGTTTTTCAGATT----CGACACTTTTGCCTCGGGCAAA 22909 |||| || |||||||| ||||||| | || || | |||||| | | Sbjct 26492 GAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCG----TGCCTCTTCGACA 26547 Query 22910 GGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNN 22969 || || || ||||| | |||||||||| | ||| || | | || | Sbjct 26548 GGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCG 26607 Query 22970 NNNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATC 23026 | ||||| | ||||| | ||||| | ||||| | ||| | Sbjct 26608 TGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGA 26667 Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || | ||||| || || ||||| || | |||||||| ||||| || || || Sbjct 26668 GAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCAC 26727 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || |||||||||| || || ||||| | ||| Sbjct 26728 AGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCC 26787 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 ||||||||||| | || | || |||||| ||| | ||| | ||| || ||| | Sbjct 26788 TTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGC 26847 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC--CTCGTACTTTTGGTACAACG 23264 | || ||| ||||| ||| | || ||| |||| | |||||| | | ||||| | Sbjct 26848 TTTTGTGCGCGAACA-GTCTCGCGACCCTTG-TTCTGCTTCTCGTAGCTCTCGTACAGAG 26905 Query 23265 CGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 | || ||||| ||||||| ||| ||||| ||||| || | | |||| ||||| || Sbjct 26906 CTTCGAATTCTTCACCGTAGACA-TCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGT 26964 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| | || | || ||| || |||| || || || || ||||| ||||||||| Sbjct 26965 GTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 27024 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || || ||||| ||||| |||||||| |||||| |||||| || || | ||| | Sbjct 27025 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 27084 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || ||||| || ||||| ||||||||||| | ||| || || || || | ||| ||||| Sbjct 27085 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCA 27144 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| ||||| || || || ||||||||||| || | ||||| || | |||||| || Sbjct 27145 CCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTA 27204 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || | ||| ||| | | || || | || |||| | ||| |||| || Sbjct 27205 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGG 27264 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || | | || || |||| ||| || || || |||||||| ||||| Sbjct 27265 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 27324 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 |||||||||||||| || | ||| | ||| || || |||||||| | | || || Sbjct 27325 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTG 27384 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTA 23802 | || ||||| ||||| |||||| || ||||| | ||||| ||| | ||| Sbjct 27385 CCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTA 27443 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || |||||||| || ||||| || ||||| || || | || || ||||| | ||| Sbjct 27444 GGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCAT 27503 Query 23863 GTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919 || ||| || | || ||||| | |||||| || || ||||||||||||| | Sbjct 27504 GTGTTGTGGGCGCTCGGCGACCTT---GCCGTTTATGCGGAGGAGATATGAACGTTCGAG 27560 Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || || ||||| | | ||||| |||||||| |||| || || ||||| || Sbjct 27561 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 27617 >seq5 Length=1540376 Score = 167 bits (184), Expect = 2e-36 Identities = 474/724 (65%), Gaps = 11/724 (2%) Strand=Plus/Minus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| || || || || ||||||| || || | ||||| || Sbjct 776247 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 776188 Query 57633 AAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 ||||| || ||| ||| | | |||| || ||| | || || ||| Sbjct 776187 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 776128 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 || | || || ||||| || |||||||| ||||| |||||||| | || || |||| Sbjct 776127 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 776068 Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 || ||||| ||| | | ||||| ||||||| ||||| || ||| | || || Sbjct 776067 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 776008 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869 ||||| || ||||| | || || || |||||||| || ||| | | || | | || Sbjct 776007 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATCAGCGAGCCCAAGCAG 775948 Query 57870 AA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928 | ||| || |||||||| ||||| | || ||| ||| ||||||||| || || Sbjct 775947 CGCAGGTAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTG 775889 Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTT 57985 | | | |||||| || || | |||| |||||| | | || | || || Sbjct 775888 GGCCCTGCGATGGATCTC---CGACAAGAACTCCACATTCGCCAACCGCCTTGTTGCATT 775832 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045 |||||| || || ||||| ||||| || || || | || || ||| | ||||| Sbjct 775831 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 775772 Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105 ||||| ||||||||||| || || || ||||||| | || || || |||||||| | Sbjct 775771 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 775712 Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165 || || || || || ||||| | | ||||| | | | || || || | | || Sbjct 775711 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGTC 775652 Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225 || | || ||||| || || |||| ||| || | ||||| | | ||| || || Sbjct 775651 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 775592 Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285 ||| || ||||||| |||||| | | | |||| | ||||| ||||| || || Sbjct 775591 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 775532 Query 58286 CGAC 58289 ||| Sbjct 775531 TGAC 775528 >seq10 Length=1117896 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| || ||||| |||| || ||| | | Sbjct 915064 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 915123 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| || || ||||||||| || | || || ||||| Sbjct 915124 GACACTATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 915183 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || |||||||||||| ||| | || || ||| Sbjct 915184 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCAGACTACAAC 915243 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || |||||| |||| ||| | || | || |||| Sbjct 915244 ATCCAAAAGGAGTCTACACTTCATTTGGTGCTTCGTCTCCGTGGTGGTA 915292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || || || || |||||| |||| ||||| | ||||||| | |||| | ||||| | Sbjct 914579 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTCAA---G 914635 Query 31277 AG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || || | | ||||||||| ||| | || || ||||||||||| | || ||||| ||| Sbjct 914636 AGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGC 914695 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || || | || || ||| || ||||| || || ||||| || || Sbjct 914696 AAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAACATCCAGAAGGAATCTACCCTG 914755 Query 31394 CATCTGGTACT 31404 ||||| || || Sbjct 914756 CATCTCGTCCT 914766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765959805680