Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq16 354 7e-93
seq5 167 2e-36
seq10 116 3e-21
>seq16
Length=840418
Score = 354 bits (392), Expect = 7e-93
Identities = 1206/1857 (65%), Gaps = 46/1857 (2%)
Strand=Plus/Plus
Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202
|||| || ||||| |||||||| ||||| ||||| |||||| | ||| || || |
Sbjct 25784 TGGTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAG 25843
Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262
| || | || || | | ||| | ||||| | || | ||||||| ||| || |
Sbjct 25844 AAGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAA 25903
Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322
| || || || || || |||||||| | || | | ||| ||| || ||||| ||||
Sbjct 25904 TGAAAGCACCACGGTCAGCGGCCATCTCAATGATCCTTCGCTGCGAGATCTCCCAGACGG 25963
Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTA 22381
||||||| || | | |||| || || | | || |||| | || || |
Sbjct 25964 TCTTGTAAAGGGTCTTTGTCTCCTCAGGGAT-GTTGGGAATCCTGGCAATCGAACCTCCA 26022
Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441
| | ||||| || || || | || ||||| ||| ||| || | || |||
Sbjct 26023 TCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTG 26082
Query 22442 ACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499
| || ||| |||| || || || ||||| || | | ||| ||||| || ||||
Sbjct 26083 AGCAACCATG--GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGT 26140
Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559
|||| ||| | || ||||| | || ||||| ||||| ||||| | || || || || |
Sbjct 26141 TGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTG 26200
Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCA 22619
|||| || || | || |||||||| | | ||||||| | ||| || ||| ||
Sbjct 26201 GCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAG 26260
Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACAC 22677
|| ||||||||| || || | || || ||||| |||||||||||| || | | ||
Sbjct 26261 ACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATT---CCACATATCGTACTGGAGGATAC 26317
Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTC 22737
| | || || | | | |||||||| || | ||| |||||| | | || | ||
Sbjct 26318 CCTGGGATACGG-GAGAT-CCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTC 26375
Query 22738 GCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTCG- 22795
||| | | || | | || || ||||||||||||| |||| | |||
Sbjct 26376 GCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTT 26435
Query 22796 -GCGGCGGC-GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853
|| || | ||| ||| | || | || | | ||| || || || | ||| |
Sbjct 26436 AGCTTCGTCTGAC----TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTT 26491
Query 22854 GAACGCCTATACCGATCGGTCGGTTTTTCAGATT----CGACACTTTTGCCTCGGGCAAA 22909
|||| || |||||||| ||||||| | || || | |||||| | |
Sbjct 26492 GAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCG----TGCCTCTTCGACA 26547
Query 22910 GGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNN 22969
|| || || ||||| | |||||||||| | ||| || | | || |
Sbjct 26548 GGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCG 26607
Query 22970 NNNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATC 23026
| ||||| | ||||| | ||||| | ||||| | ||| |
Sbjct 26608 TGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGA 26667
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|| || | ||||| || || ||||| || | |||||||| ||||| || || ||
Sbjct 26668 GAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCAC 26727
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || || | || |||||||||| || || ||||| | |||
Sbjct 26728 AGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCC 26787
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
||||||||||| | || | || |||||| ||| | ||| | ||| || ||| |
Sbjct 26788 TTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGC 26847
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC--CTCGTACTTTTGGTACAACG 23264
| || ||| ||||| ||| | || ||| |||| | |||||| | | ||||| |
Sbjct 26848 TTTTGTGCGCGAACA-GTCTCGCGACCCTTG-TTCTGCTTCTCGTAGCTCTCGTACAGAG 26905
Query 23265 CGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323
| || ||||| ||||||| ||| ||||| ||||| || | | |||| ||||| ||
Sbjct 26906 CTTCGAATTCTTCACCGTAGACA-TCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGT 26964
Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383
|||| | || | || ||| || |||| || || || || ||||| |||||||||
Sbjct 26965 GTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 27024
Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443
|| || ||||| ||||| |||||||| |||||| |||||| || || | ||| |
Sbjct 27025 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 27084
Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503
|| ||||| || ||||| ||||||||||| | ||| || || || || | ||| |||||
Sbjct 27085 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCA 27144
Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563
||||| ||||| || || || ||||||||||| || | ||||| || | |||||| ||
Sbjct 27145 CCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTA 27204
Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623
|| | ||| ||| | | || || | || |||| | ||| |||| ||
Sbjct 27205 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGG 27264
Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683
|| || || || | | || || |||| ||| || || || |||||||| |||||
Sbjct 27265 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 27324
Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743
|||||||||||||| || | ||| | ||| || || |||||||| | | || ||
Sbjct 27325 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTG 27384
Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTA 23802
| || ||||| ||||| |||||| || ||||| | ||||| ||| | |||
Sbjct 27385 CCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTA 27443
Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862
|| |||||||| || ||||| || ||||| || || | || || ||||| | |||
Sbjct 27444 GGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCAT 27503
Query 23863 GTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919
|| ||| || | || ||||| | |||||| || || ||||||||||||| |
Sbjct 27504 GTGTTGTGGGCGCTCGGCGACCTT---GCCGTTTATGCGGAGGAGATATGAACGTTCGAG 27560
Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|| || || ||||| | | ||||| |||||||| |||| || || ||||| ||
Sbjct 27561 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 27617
>seq5
Length=1540376
Score = 167 bits (184), Expect = 2e-36
Identities = 474/724 (65%), Gaps = 11/724 (2%)
Strand=Plus/Minus
Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632
||| | |||||||| ||||| || || || || ||||||| || || | ||||| ||
Sbjct 776247 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 776188
Query 57633 AAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689
||||| || ||| ||| | | |||| || ||| | || || |||
Sbjct 776187 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 776128
Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749
|| | || || ||||| || |||||||| ||||| |||||||| | || || ||||
Sbjct 776127 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 776068
Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809
|| ||||| ||| | | ||||| ||||||| ||||| || ||| | || ||
Sbjct 776067 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 776008
Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869
||||| || ||||| | || || || |||||||| || ||| | | || | | ||
Sbjct 776007 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATCAGCGAGCCCAAGCAG 775948
Query 57870 AA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928
| ||| || |||||||| ||||| | || ||| ||| ||||||||| || ||
Sbjct 775947 CGCAGGTAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTG 775889
Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTT 57985
| | | |||||| || || | |||| |||||| | | || | || ||
Sbjct 775888 GGCCCTGCGATGGATCTC---CGACAAGAACTCCACATTCGCCAACCGCCTTGTTGCATT 775832
Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045
|||||| || || ||||| ||||| || || || | || || ||| | |||||
Sbjct 775831 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 775772
Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105
||||| ||||||||||| || || || ||||||| | || || || |||||||| |
Sbjct 775771 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 775712
Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165
|| || || || || ||||| | | ||||| | | | || || || | | ||
Sbjct 775711 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGTC 775652
Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225
|| | || ||||| || || |||| ||| || | ||||| | | ||| || ||
Sbjct 775651 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 775592
Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285
||| || ||||||| |||||| | | | |||| | ||||| ||||| || ||
Sbjct 775591 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 775532
Query 58286 CGAC 58289
|||
Sbjct 775531 TGAC 775528
>seq10
Length=1117896
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| ||||| ||||| || ||||| |||| || ||| | |
Sbjct 915064 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 915123
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| || || ||||||||| || | || || |||||
Sbjct 915124 GACACTATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 915183
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| || || |||||||||||| ||| | || || |||
Sbjct 915184 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCAGACTACAAC 915243
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || || |||||| |||| ||| | || | || ||||
Sbjct 915244 ATCCAAAAGGAGTCTACACTTCATTTGGTGCTTCGTCTCCGTGGTGGTA 915292
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/191 (71%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| || || || |||||| |||| ||||| | ||||||| | |||| | ||||| |
Sbjct 914579 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTCAA---G 914635
Query 31277 AG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333
|| || | | ||||||||| ||| | || || ||||||||||| | || ||||| |||
Sbjct 914636 AGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGC 914695
Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393
|| ||| | || || | || || ||| || ||||| || || ||||| || ||
Sbjct 914696 AAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAACATCCAGAAGGAATCTACCCTG 914755
Query 31394 CATCTGGTACT 31404
||||| || ||
Sbjct 914756 CATCTCGTCCT 914766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765959805680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |