Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq16 147 3e-30
>seq16
Length=840418
Score = 147 bits (162), Expect = 3e-30
Identities = 587/907 (65%), Gaps = 24/907 (3%)
Strand=Plus/Plus
Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247
|||||| || || || | |||| | | | | ||| || || | ||| ||||||| |
Sbjct 26907 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 26966
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307
||| | |||| || | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 26967 CCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 27026
Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367
||||| | | | ||||| || || ||||| || || ||||| ||||
Sbjct 27027 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAA 27085
Query 63368 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426
| | |||| ||||| || || | ||| ||||| | | || || || ||||| || |
Sbjct 27086 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 27145
Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486
|||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || |
Sbjct 27146 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAG 27205
Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAG 63544
|| | || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 27206 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AG 27263
Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604
|| || || || || | || ||||| || || || || | ||||| || |||||
Sbjct 27264 GCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCC 27323
Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGAGTA 63662
|| ||||| || || |||||| | || || || |||||| |||||| | ||
Sbjct 27324 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG-GT- 27381
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATT 63721
|| ||||| || || || || || || ||||| || || | |||| ||| | |||| |
Sbjct 27382 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TC 27440
Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATT 63779
||| ||||| || || ||| || ||| | ||||| || || || ||||||||
Sbjct 27441 GTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATG 27498
Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839
| |||||| || || | || | | ||| |||||| | | || || |||
Sbjct 27499 AGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCG 27558
Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899
| || || |||||||| | | ||| ||||| || ||||| | ||| |||| |||
Sbjct 27559 AGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTG 27618
Query 63900 AGCTTATCCTTATATTTGTTAACTATATCCATGGTAAT---ACTTGAAATAATCGG-AGA 63955
|||| || | | | | | ||| || || || | || || || || |
Sbjct 27619 AGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGT 27675
Query 63956 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 64015
| ||| || || || || || ||||||||| | | ||| || | ||| | ||| |
Sbjct 27676 CTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACCACGAGAGAGAATTG 27734
Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075
|| ||||| | |||||| |||||||||| || || | || || || || || || ||
Sbjct 27735 CTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTC 27794
Query 64076 CGGATGT 64082
||||||
Sbjct 27795 GGGATGT 27801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629816978055120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |