Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq5 284 2e-71
seq16 154 2e-32
>seq5
Length=1540376
Score = 284 bits (314), Expect = 2e-71
Identities = 581/856 (68%), Gaps = 23/856 (3%)
Strand=Plus/Minus
Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081
||| | |||||||| ||||| |||| || || ||||| | || ||| |||| || |||
Sbjct 776247 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 776188
Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141
|||||||| |||| ||| | | ||| | | || ||||| || || || |||
Sbjct 776187 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 776128
Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200
| | |||||||| || | ||||||||| || |||||||| || || ||||| |||||
Sbjct 776127 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAG-CGATT 776069
Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260
|||| || | || || |||| ||||| ||||| |||||||||||||| ||
Sbjct 776068 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 776009
Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317
|||||| ||||| || | |||||| || || |||| ||||| |||| || |||
Sbjct 776008 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATCAGCGAGCCCAAGCA 775949
Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377
|| | || ||||| ||||| ||||||| | || | || || || ||||| |
Sbjct 775948 GCGCAGGTAC---CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGA 775892
Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437
|||| | || |||||| ||| | || || | | |||| || | || || |||||
Sbjct 775891 CTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTTGTTGCATT 775832
Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497
|||||| || ||||| |||||||| ||| ||| || ||||||| |||||||||||
Sbjct 775831 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 775772
Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557
|||||| || |||||||| || || | |||||| | || || || ||||||||| |
Sbjct 775771 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 775712
Query 125558 ACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAG 125617
||| ||||| ||| || || || || ||| | |||| || ||||
Sbjct 775711 GCACACCGACTTCGCCTGCCTTCTCTT------CTCTCT---CCTCGAGAACAAGCCCAG 775661
Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677
| || |||| || | || || ||||| ||| || || ||||| | |
Sbjct 775660 CCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAG 775601
Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737
||| | ||||| | || | ||||||||| | || |||||| | ||||| ||
Sbjct 775600 CGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGA 775541
Query 125738 GTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAA 125794
||| || || || ||||| |||| | | ||| || |||| | ||| ||||||
Sbjct 775540 GTTCGTCGCTGACCGTCTGCTGT---TGGCCCTCGGCAACGTCAAGGTCTACCACGCCAC 775484
Query 125795 GAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854
|| ||||| || |||||| | ||| || || | |||||||||||||| ||||||||
Sbjct 775483 CAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAA 775424
Query 125855 GAAGGTCAGCGAGTAC 125870
| ||| |||| |||
Sbjct 775423 GCGCGTCGGCGACTAC 775408
>seq16
Length=840418
Score = 154 bits (170), Expect = 2e-32
Identities = 319/472 (68%), Gaps = 2/472 (0%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || ||||| || | ||| ||||| | || || |||||||| |||
Sbjct 27149 CAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGAC 27090
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| |||| ||| | || ||||||| ||| ||| || |||| || || | ||
Sbjct 27089 GTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGAT 27030
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || || || ||| | || || | ||||||||||| || | ||| ||| ||
Sbjct 27029 CTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAAGACAACGGCAAC 26970
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || |||||||| || || || || || ||||| || || ||||| ||
Sbjct 26969 TGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTC 26910
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|| || |||| | ||||||| | || | | || ||||| ||| ||||
Sbjct 26909 GAAGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGTCGCGAGACTGTTCG-CGCACA 26851
Query 97175 AGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234
| | || ||| | |||||| | ||| ||| |||||||| | || | || |||||
Sbjct 26850 AAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATGCTCTA 26791
Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294
|||||| | || ||||| |||||||| || | || |||||| |||||||
Sbjct 26790 CAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAA 26731
Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
|||||||| || ||||| |||||| || |||| || ||| || ||||||
Sbjct 26730 CCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGC 26679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058468204040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |