Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 284 2e-71 seq16 154 2e-32 >seq5 Length=1540376 Score = 284 bits (314), Expect = 2e-71 Identities = 581/856 (68%), Gaps = 23/856 (3%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| | |||||||| ||||| |||| || || ||||| | || ||| |||| || ||| Sbjct 776247 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 776188 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 |||||||| |||| ||| | | ||| | | || ||||| || || || ||| Sbjct 776187 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 776128 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | |||||||| || | ||||||||| || |||||||| || || ||||| ||||| Sbjct 776127 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAG-CGATT 776069 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 |||| || | || || |||| ||||| ||||| |||||||||||||| || Sbjct 776068 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 776009 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317 |||||| ||||| || | |||||| || || |||| ||||| |||| || ||| Sbjct 776008 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATCAGCGAGCCCAAGCA 775949 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 || | || ||||| ||||| ||||||| | || | || || || ||||| | Sbjct 775948 GCGCAGGTAC---CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGA 775892 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 |||| | || |||||| ||| | || || | | |||| || | || || ||||| Sbjct 775891 CTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTTGTTGCATT 775832 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 |||||| || ||||| |||||||| ||| ||| || ||||||| ||||||||||| Sbjct 775831 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 775772 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 |||||| || |||||||| || || | |||||| | || || || ||||||||| | Sbjct 775771 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 775712 Query 125558 ACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAG 125617 ||| ||||| ||| || || || || ||| | |||| || |||| Sbjct 775711 GCACACCGACTTCGCCTGCCTTCTCTT------CTCTCT---CCTCGAGAACAAGCCCAG 775661 Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677 | || |||| || | || || ||||| ||| || || ||||| | | Sbjct 775660 CCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAG 775601 Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737 ||| | ||||| | || | ||||||||| | || |||||| | ||||| || Sbjct 775600 CGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGA 775541 Query 125738 GTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAA 125794 ||| || || || ||||| |||| | | ||| || |||| | ||| |||||| Sbjct 775540 GTTCGTCGCTGACCGTCTGCTGT---TGGCCCTCGGCAACGTCAAGGTCTACCACGCCAC 775484 Query 125795 GAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 || ||||| || |||||| | ||| || || | |||||||||||||| |||||||| Sbjct 775483 CAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAA 775424 Query 125855 GAAGGTCAGCGAGTAC 125870 | ||| |||| ||| Sbjct 775423 GCGCGTCGGCGACTAC 775408 >seq16 Length=840418 Score = 154 bits (170), Expect = 2e-32 Identities = 319/472 (68%), Gaps = 2/472 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || ||||| || | ||| ||||| | || || |||||||| ||| Sbjct 27149 CAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGAC 27090 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||| ||| | || ||||||| ||| ||| || |||| || || | || Sbjct 27089 GTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGAT 27030 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || || ||| | || || | ||||||||||| || | ||| ||| || Sbjct 27029 CTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAAGACAACGGCAAC 26970 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || |||||||| || || || || || ||||| || || ||||| || Sbjct 26969 TGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTC 26910 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 || || |||| | ||||||| | || | | || ||||| ||| |||| Sbjct 26909 GAAGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGTCGCGAGACTGTTCG-CGCACA 26851 Query 97175 AGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 | | || ||| | |||||| | ||| ||| |||||||| | || | || ||||| Sbjct 26850 AAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATGCTCTA 26791 Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 |||||| | || ||||| |||||||| || | || |||||| ||||||| Sbjct 26790 CAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAA 26731 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 |||||||| || ||||| |||||| || |||| || ||| || |||||| Sbjct 26730 CCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGC 26679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058468204040