Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq14 82.4 6e-11
seq10 82.4 6e-11
>seq14
Length=985265
Score = 82.4 bits (90), Expect = 6e-11
Identities = 96/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTGGT 21196
|| |||||||| || |||||||| ||||| || | ||||| || ||||| | ||| |
Sbjct 796338 GAAGTTGCCCAAGTCACCGACGTGGCGCTCCTCGTCCTCGGGGGCACCGTGTGTCTTGTT 796397
Query 21197 GCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256
| | ||||| ||||| |||||||| ||||||||||| || ||||||| || |||
Sbjct 796398 GTGG-GGGTTGAAGTGGGGACCGGCGGATGTGCAGCCGTTTGTGTTGTCGCCAAAGGCGT 796456
Query 21257 GAACGTG 21263
| |||||
Sbjct 796457 GGACGTG 796463
>seq10
Length=1117896
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||| || || ||||| || | | ||| | |||| ||
Sbjct 915501 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 915442
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||| ||||| || | || || | |||||| ||| || | ||||| |||||
Sbjct 915441 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 915382
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || ||||| | | ||| || |||| | ||| ||| | |||||||| ||
Sbjct 915381 GATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTT 915322
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||| ||||| || || |||||
Sbjct 915321 TCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414572400844126
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |