Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10 86.0 5e-12 >seq10 Length=1117896 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||||||||| ||||||||| |||||||| || | | || |||| || Sbjct 915273 CACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTC 915214 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| ||| || | || | |||||| || ||| || | || ||||||||| Sbjct 915213 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 915154 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| ||| ||||| | || || ||| | || ||| ||||| || ||||| || Sbjct 915153 AATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTT 915094 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || || || || ||||| Sbjct 915093 GCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || |||||| || |||||||| || | | ||| |||| || Sbjct 915501 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 915442 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| || | || | ||||||||| ||| || | || ||||||||| Sbjct 915441 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 915382 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | || || ||| | ||||| || | ||| ||||| || Sbjct 915381 GATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTT 915322 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| || || || |||||||| Sbjct 915321 TCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250794414079