Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq10 86.0 5e-12
>seq10
Length=1117896
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| ||||||||||| ||||||||| |||||||| || | | || |||| ||
Sbjct 915273 CACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTC 915214
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| |||||| ||| || | || | |||||| || ||| || | || |||||||||
Sbjct 915213 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 915154
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||| ||| ||||| | || || ||| | || ||| ||||| || ||||| ||
Sbjct 915153 AATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTT 915094
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || || || || || || |||||
Sbjct 915093 GCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || || |||||| || |||||||| || | | ||| |||| ||
Sbjct 915501 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 915442
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||||||| || | || | ||||||||| ||| || | || |||||||||
Sbjct 915441 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 915382
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | || || ||| | ||||| || | ||| ||||| ||
Sbjct 915381 GATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTT 915322
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| ||||| || || || ||||||||
Sbjct 915321 TCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421250794414079
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |