Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq10 100 3e-16 >seq10 Length=1117896 Score = 100 bits (110), Expect = 3e-16 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||||||| | |||||| ||||| || | ||| || || | | || ||| | || Sbjct 915501 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGCGTTCGGCCGTCT 915444 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || | ||||| | | ||||| || ||||||||||| || ||||| Sbjct 915443 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 915384 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGG 94973 | || || | ||| || | ||| ||||| || ||| ||||| || | || |||| Sbjct 915383 TGGATCTTGGACTTTACATTGTCGATCGTGTC-GC-TGGACTCGACTTCCAATGTAATGG 915326 Query 94974 TTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||||||| || || ||||||||||| Sbjct 915325 TCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | ||||| |||||||| | ||| || || | ||| | || || Sbjct 915273 CACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTC 915214 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| |||||| | ||||| | | || || || ||||||||||| || ||||| | Sbjct 915213 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 915154 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976 ||| || | ||||||| | | | |||||| || || || || || | ||||||||| | Sbjct 915153 AATCTTCGACTTGACGTTGTCAATAGTGTC-GCTTGATTCCACCTCGAGCGTGATGGTCT 915095 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || || ||||| ||||| Sbjct 915094 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290757312440