Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq16 161 1e-34 >seq16 Length=840418 Score = 161 bits (178), Expect = 1e-34 Identities = 589/907 (65%), Gaps = 24/907 (3%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||| || || || | |||| | | | ||||| || || | ||| ||||||| | Sbjct 26907 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 26966 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| | |||| || | || || ||||| ||||| ||||||||||| ||||| || Sbjct 26967 CCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 27026 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 ||||| | | | ||||| || || ||||| || || ||||| |||| Sbjct 27027 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAA 27085 Query 63317 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | | |||| ||||| || || | ||| ||||| | | || || || ||||| || | Sbjct 27086 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 27145 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 |||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || | Sbjct 27146 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAG 27205 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 63493 || | || || || || ||| || ||| | |||||||| | | ||| || Sbjct 27206 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AG 27263 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || || || || | || ||||| || || || || | ||||| || || || Sbjct 27264 GCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCC 27323 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTA 63611 || ||||| || || |||||| | || || || |||||| |||||| | Sbjct 27324 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GT 27381 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATT 63670 || ||||| || || || || || || ||||| || || | |||| ||| | |||| | Sbjct 27382 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TC 27440 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATT 63728 ||| ||||| || || ||| || ||| | ||||| || || || |||||||| Sbjct 27441 GTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATG 27498 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 | |||||| || || | || ||| |||| |||||| | | || || ||| Sbjct 27499 AGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCG 27558 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63848 | || || |||||||| | | ||| ||||| || ||||| | ||| |||||||| Sbjct 27559 AGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTG 27618 Query 63849 AGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTGAAATAATCGG-AGA 63904 || | || | | | | | ||| || || ||| | || || || || | Sbjct 27619 AGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGT 27675 Query 63905 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 63964 | ||| || || || || || ||||||||| | | ||| || | ||| | ||| | Sbjct 27676 CTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACCACGAGAGAGAATTG 27734 Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 || ||||| | |||||| ||||||||||| || || | || || || || || || || Sbjct 27735 CTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTC 27794 Query 64025 CGGATGT 64031 |||||| Sbjct 27795 GGGATGT 27801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946584839640