Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq16 280 4e-70 >seq16 Length=840418 Score = 280 bits (310), Expect = 4e-70 Identities = 536/779 (69%), Gaps = 12/779 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| |||| || ||| ||| || || || | ||||| ||||| || Sbjct 27419 TTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCA 27360 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || |||||| || || | |||||||| |||| Sbjct 27359 TGCTTCCTCATCGACATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCAAGACC 27300 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || ||||| ||||| | | || | ||| ||||||| Sbjct 27299 TGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTCAACG-TGCACCGCATTCGTGC 27241 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||| | ||||| ||| || ||||| || |||||||||| | Sbjct 27240 TACTGG-CTCATACATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCC 27182 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| | |||| ||||| | || |||||||||||||| ||||| ||| || | Sbjct 27181 GTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCT 27122 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || || || |||||||| || || || | |||| || ||||| || || || | Sbjct 27121 TCGCCATCTACCTCGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGA 27062 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | || || || ||||| ||||| || || ||| || |||||| Sbjct 27061 ACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACC 27002 Query 363965 ATTTTATGAAGCGCGTGGAGG-CAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAAT 364021 || |||||||| || | | || | | || ||| |||| | ||||| |||| | Sbjct 27001 TCTTCATGAAGCGTGTTCAAGACA---ACGGCAACTGGACACTGATGTGCCCGAACGAGT 26945 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || ||||||| | ||||| || | | ||||| ||||| | || || Sbjct 26944 GCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAGA 26885 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | || |||| ||| |||| ||| |||||| ||||| |||| |||||| | || Sbjct 26884 AGCAGAACAAGGGTCGCGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGG 26825 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| ||||| || | |||| |||| | ||||| || | |||||||||||| || Sbjct 26824 CACAGACCGAGACTGGTAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCA 26765 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| ||||| || | |||| | ||||| || || |||||| | || ||| Sbjct 26764 ACCAGAAGAACCTCGGTACCATCC-GCAGCTCCAACCTGTGCACTGAGATTGTGGAGTAC 26706 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 |||||||| || ||| || || || ||| | || || | || || || | ||||| Sbjct 26705 ACCGCTCCTGATGAGGTCGCTGTTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGT 26647 Score = 149 bits (164), Expect = 2e-30 Identities = 358/542 (66%), Gaps = 0/542 (0%) Strand=Plus/Minus Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674 || || || || || || | || ||||| | |||||| ||| | ||||||||||| Sbjct 26345 ACCTACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACGATATGTGGAATGTCACA 26286 Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734 || ||| || ||| |||||| | || || || |||| ||| ||| Sbjct 26285 CCTACTGACCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGC 26226 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 ||||| || | | || |||||||| || || || ||| ||||||| || || |||||| Sbjct 26225 AACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAAC 26166 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 ||||||||||| || | || ||| | ||||| ||||| || || | || || || Sbjct 26165 GAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTC 26106 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | ||| || || | | ||||||| ||| |||| || |||||| ||| | | Sbjct 26105 CAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAAC 26046 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 ||||||||| ||||||||||| | ||||| | | ||||| | || || Sbjct 26045 ATGAAGAACCGTATCATCGCCGATGGAGGTTCGATTGCCAGGATTCCCAACATCCCTGAG 25986 Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATG 365034 || ||| | ||||||| ||||| ||||| || || ||||| ||||||| ||| Sbjct 25985 GAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCATTGAGATG 25926 Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094 || || || || |||||||| || ||| |||||| | ||| | ||||| || Sbjct 25925 GCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACATGAAGGAG 25866 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154 || || | |||| | || || ||||| || || ||||| | ||||| ||||| Sbjct 25865 CCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTCAAGACT 25806 Query 365155 GG 365156 || Sbjct 25805 GG 25804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352280761778