Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq16 192 6e-44
seq5 150 2e-31
seq10 122 8e-23
seq14 84.2 2e-11
>seq16
Length=840418
Score = 192 bits (212), Expect = 6e-44
Identities = 923/1451 (64%), Gaps = 45/1451 (3%)
Strand=Plus/Plus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| ||||| || || | ||||| || |||| | ||| || ||| | ||
Sbjct 26095 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 26154
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || ||||||| |||||||| || || | || | || || |||||| || |
Sbjct 26155 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 26214
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| | || ||||| | ||||||| || | ||||| || | |||| |||||
Sbjct 26215 AGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 26274
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| ||| || | || | |||||| |||||||| | || |||| | ||||
Sbjct 26275 AGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 26334
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGAG 145355
|||| ||| ||||| | ||||||| || |||| ||||| | ||||
Sbjct 26335 CCTTCGTAGGTCTTGTAA--GGACCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAG 26392
Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415
| | || || |||||| ||||| |||||||| | | ||||| || ||||
Sbjct 26393 CAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGA 26452
Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475
| || | ||| || | || |||||||| || || || | |||| |||||||| |
Sbjct 26453 AAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTC 26512
Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535
| || | |||||| | ||| |||| ||| || | || ||||| || |
Sbjct 26513 GGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGATGATCT 26572
Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC---C 145592
| |||||||| || || |||| ||| | | | | ||| | ||||||||| |
Sbjct 26573 TGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACGC 26632
Query 145593 GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652
|||| || |||| | | | | | ||| | || ||||| || ||||| ||
Sbjct 26633 CGGCCTTGTAGTCGACAAAAGA---AGGCAGGGCAAGAGAAGCCAAGTTGCAAACAGCGA 26689
Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712
||| || | || |||| | || ||||| | ||||| ||| | |||||| |
Sbjct 26690 CCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTAC 26749
Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772
| || || | ||| || || || | |||||| ||||||||||||||||| | || |
Sbjct 26750 CGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTAC 26809
Query 145773 CAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCT--GCGCACGCACCTGCTG 145830
||||||| ||| | ||| | ||| || ||| | | | || || || ||
Sbjct 26810 CAGTCTCGGTCTGTGCCTCAAGGATGG--CGTACCAAAGCTTTTGTGCGCGAACAGTCTC 26867
Query 145831 CTGGTAGCGGCCCTC-TTCT-----TCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884
||| |||| |||| ||||| || ||| || | || || | |||
Sbjct 26868 ------GCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACC 26921
Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944
|||| ||||| ||||| || |||| ||| || |||||||| | ||| ||||||| |
Sbjct 26922 GTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTC 26981
Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTT 146004
| || |||| ||| || | || || | |||||| ||||| | | ||||| ||
Sbjct 26982 TTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCG 27041
Query 146005 GCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063
| ||||| || ||| | || || | ||| | | | ||| ||| |||||||
Sbjct 27042 GACCTCCTCCTTGCCGTGGTTCTTGCG-CAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 27100
Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGAC 146120
| || || | |||| ||||| ||| ||| || ||| ||||||||||| || | |
Sbjct 27101 ATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAGC 27160
Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT-- 146178
| | ||||||| | || || | |||||| || || | | | ||||| ||
Sbjct 27161 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAGTGC 27220
Query 146179 -AGAGTT-TATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236
| | | ||| | ||| | || | || || || || | ||| | ||||||
Sbjct 27221 CACCGATGTAT----GAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCA 27276
Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296
|| |||||| || || ||| ||| || ||||| |||||||| ||||| ||
Sbjct 27277 GCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCC 27336
Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGA 146354
|||| ||| ||| || ||||| || |||| || | || || ||||| ||
Sbjct 27337 TCCTTC--ATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGA 27394
Query 146355 ACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATC-ATCCGATACGTTTCGATA 146413
|||||||||| ||||| || || ||| | ||| | || || || |||||
Sbjct 27395 ACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCG-TAGGTCTCGATG 27453
Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473
|| | | ||||| ||||| |||||||| | ||| || ||||||||||||||||| ||
Sbjct 27454 GCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGG 27513
Query 146474 CGCTCCGCCAC 146484
||||| || ||
Sbjct 27514 CGCTCGGCGAC 27524
>seq5
Length=1540376
Score = 150 bits (166), Expect = 2e-31
Identities = 350/518 (68%), Gaps = 15/518 (3%)
Strand=Plus/Minus
Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143
|| || ||| | |||||||| |||||||||| || |||||| | || | | |
Sbjct 775917 ATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAAGAACTCC 775858
Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203
|| |||||| | || | || || || || ||| ||||| |||| || || |
Sbjct 775857 ACATTCGCCAACCGCCTTGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCT 775798
Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262
|| ||| ||||||| | |||| || | || | | |||||||| || || || |||
Sbjct 775797 TTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTC-TGATGCCCGGTCTAACATTCTCCAA 775739
Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG---TCTCTACTATAA 46319
|||||| || || || ||||||||| |||| || ||||| || || ||||| || |
Sbjct 775738 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCT 775679
Query 46320 CACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC-ATGTTCAAGGAGGCGG 46378
| |||| | || | | ||| || || | || | |||| || ||| || || |
Sbjct 775678 C-CTCGAGAACAAGCCCAGC-----CCAGAGTCTGT-CAGAGCTATCATCACTGAAGCCG 775626
Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG 46438
| | |||||| ||||||| || | | |||||| || || ||||| ||||||||||
Sbjct 775625 TCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACG 775566
Query 46439 C-ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497
| || ||| ||||| | ||||||||||| || || ||||| ||||| || || |
Sbjct 775565 CTACTCTCA-TGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGC 775507
Query 46498 CAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557
| ||| | ||||| ||| || || || || ||| | ||||| || ||||
Sbjct 775506 AACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCT 775447
Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
|| || || || || ||||| |||||||||||||| ||
Sbjct 775446 GGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 775409
>seq10
Length=1117896
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| ||||| || || | || |||||||| || |||||||| ||
Sbjct 915518 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 915459
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||| || |||||||| || ||| |||| | ||||||||||||||||||
Sbjct 915458 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 915399
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | || | || ||| |||||||||
Sbjct 915398 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACT 915339
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| ||| || ||||| ||||| || ||||| ||||||||
Sbjct 915338 TCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
|| || || | ||| | ||| || ||||| || |||||||| ||| || ||||||
Sbjct 914769 CGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA 914710
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
||||| ||||||||||| ||| |||| || ||||||||||| || || || || || |||
Sbjct 914709 TCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 914650
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| ||| || ||||| | || | ||| |||| |||||| | |||| ||| | |
Sbjct 914649 TCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATG 914590
Query 131200 GTTTTACCGGT 131210
|| || |||||
Sbjct 914589 GTCTTTCCGGT 914579
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| ||||| | || ||||||||||| |||||||| ||
Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||| || | |||||| || ||| |||| | |||||| |||||||||||
Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || ||| ||||| | || | ||| ||| | || || |
Sbjct 915170 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 915111
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || || || || ||||| || |||||
Sbjct 915110 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| || || || | || | || |||||||| ||||||||||| ||| |
Sbjct 915062 CCACCACGCAGGCGGAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGAC 915003
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| || ||||| || ||| |||| | || ||||| |||||||||
Sbjct 915002 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 914943
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 914942 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 914883
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|| | || | ||| || |||||
Sbjct 914882 TCAAGAGTGATGGTCTTGCCGGT 914860
>seq14
Length=985265
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || || || | ||| |||||||| || |||||||| ||
Sbjct 862992 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 862933
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||||| |||||||| || ||| |||| | ||||||||||||||| ||
Sbjct 862932 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 862873
Query 131128 ATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 862872 ATGCCCTCCTTGTC 862859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012333887360
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