Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq10 93.3 3e-14 >seq1 Length=2531235 Score = 109 bits (120), Expect = 4e-19 Identities = 207/302 (69%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| | |||||||||||||| ||| ||||||| ||||| |||| || | Sbjct 922781 ATGTCACCGACCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAGATCGAAGGCA 922840 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| ||||| || || ||||||||||||||| || || ||| || | |||| | Sbjct 922841 AGGGCAACGGCATCAAGACCGTCATTGTCAACCTGAGCAGCGTGGCTCAGTCTCTCGCCC 922900 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 |||| | | || | || || || || | |||||| || |||||||| || | Sbjct 922901 GCCCCCCTGCTCACGTCATCAAGTACTTTGGTTTCGAACTCGGAGCTCAGAC-CAACACG 922959 Query 6367 A-TCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGAC 6425 | | ||| | || || | ||| | ||||| | ||| || | |||||| |||||| Sbjct 922960 AGCCCCAACGATGACCGTTGGATCATCAACGGTGCCCATGACGCCAGCAAGCTCCAGGAC 923019 Query 6426 TTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485 | ||||| ||||| || ||||| || || || | | ||| | ||||| |||||| Sbjct 923020 TACCTTGATGGCTTCATCTCAAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACC 923079 Query 6486 GA 6487 || Sbjct 923080 GA 923081 >seq10 Length=1117896 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||||||| || ||||||||| || ||||| || | Sbjct 915292 TACCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTG 915233 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| |||| || || || |||||||| || || || || ||||| || | | Sbjct 915232 AGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAG 915173 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| ||| || ||| || || | | ||| || | ||| | Sbjct 915172 GAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCA 915113 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| || ||||| || ||||| Sbjct 915112 CCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946877508649