Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq10 98.7 9e-16
>seq10
Length=1117896
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGC 25080
||||| || ||||||| |||| || ||||| || ||||||||||| || || |||
Sbjct 914579 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGA--CAATGTCAAGA 914636
Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140
|| ||| ||||| || || ||||| || ||||| ||||| | || || |||||||
Sbjct 914637 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 914696
Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200
| || | || |||| |||||| || ||| ||||| || || || ||||| || || |
Sbjct 914697 AGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAACATCCAGAAGGAATCTACCCTGC 914756
Query 25201 ATTTAGTGCT 25210
|| | || ||
Sbjct 914757 ATCTCGTCCT 914766
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| |||| || || ||||||| |||| ||||| ||
Sbjct 915064 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 915123
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| | || | ||| ||||| || || ||||| || |||||
Sbjct 915124 GACACTATTGACAACGTCAAGTCGAAGATTCAG-GACAAGGAGGGTATTCCTCCGGACCA 915182
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || || ||||| || || || ||||| | || ||| | || |||||
Sbjct 915183 ACAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCAGACTACAA 915242
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || || || ||||| |||||
Sbjct 915243 CATCCAAAAGGAGTCTACACTTCATTTGGTGCT 915275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327582786385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |