Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 197 2e-45 >seq5 Length=1540376 Score = 197 bits (218), Expect = 2e-45 Identities = 486/726 (67%), Gaps = 17/726 (2%) Strand=Plus/Plus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| || || || ||||| || |||| | | | ||||| || || ||| | || Sbjct 775529 TCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAGA-GCGCA 775587 Query 92987 -GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||||| |||||| ||||||| || | ||| || | |||||||| | | ||| || | Sbjct 775588 TGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATAGCTCT 775647 Query 93046 TACTCTACTATTTGGTGG--TTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 || ||| | | ||| || || | ||| | | | | | ||| || |||||| Sbjct 775648 GACAG-ACTCTGGGCTGGGCTTGTTCT-CGAGGAGAGAGAAGAGAAGGCAGGCGAAGTCG 775705 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 || || | || ||||| || || || | ||| ||| |||||||| ||| || | ||| Sbjct 775706 GTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGA 775765 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || || ||||||||||| || || || || ||| ||| || || ||||| || || Sbjct 775766 CCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACA 775825 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT---GCTGATCCATTTT 93280 || || ||||| |||| || | ||| || || ||| || | | ||||||| Sbjct 775826 GCGGCGAATGCAACAAGGCGGTTGGCGAA---TGTGGAGTTCTTGTCGGAGATCCATCGC 775882 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTTAAATAGGTA 93339 | ||||| ||||| || || || || || | |||| ||||| ||||| || ||||| Sbjct 775883 AGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGA-TGTTGTCGATGGCGTTGAAGAGGTA 775941 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 |||| | | || | |||||||| ||||| | |||||| || | || || || Sbjct 775942 CCTGCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGCAGAGAGTAGGTCTCTGAGTG 776001 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| |||||||| |||||||| |||| || || | ||| || ||||| Sbjct 776002 AACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGTACTTC 776061 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||| |||| ||| || || || || ||||| || |||||||| ||||| || || || Sbjct 776062 GCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAGAAGGC 776121 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTTATCCCAATCGGATAG 93576 | | || || || ||| ||||| || | |||| | ||| ||| || Sbjct 776122 GAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTCCAGTCGTGAAG 776181 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || || || || |||| || || | ||||| || || || || || || |||||||| Sbjct 776182 GTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 776241 Query 93637 ATCCCA 93642 | ||| Sbjct 776242 CTGCCA 776247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860250099960