Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq5 197 2e-45
>seq5
Length=1540376
Score = 197 bits (218), Expect = 2e-45
Identities = 486/726 (67%), Gaps = 17/726 (2%)
Strand=Plus/Plus
Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986
||||| || || || ||||| || |||| | | | ||||| || || ||| | ||
Sbjct 775529 TCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAGA-GCGCA 775587
Query 92987 -GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045
||||| |||||| ||||||| || | ||| || | |||||||| | | ||| || |
Sbjct 775588 TGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATAGCTCT 775647
Query 93046 TACTCTACTATTTGGTGG--TTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103
|| ||| | | ||| || || | ||| | | | | | ||| || ||||||
Sbjct 775648 GACAG-ACTCTGGGCTGGGCTTGTTCT-CGAGGAGAGAGAAGAGAAGGCAGGCGAAGTCG 775705
Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163
|| || | || ||||| || || || | ||| ||| |||||||| ||| || | |||
Sbjct 775706 GTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGA 775765
Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223
|| || ||||||||||| || || || || ||| ||| || || ||||| || ||
Sbjct 775766 CCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACA 775825
Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT---GCTGATCCATTTT 93280
|| || ||||| |||| || | ||| || || ||| || | | |||||||
Sbjct 775826 GCGGCGAATGCAACAAGGCGGTTGGCGAA---TGTGGAGTTCTTGTCGGAGATCCATCGC 775882
Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTTAAATAGGTA 93339
| ||||| ||||| || || || || || | |||| ||||| ||||| || |||||
Sbjct 775883 AGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGA-TGTTGTCGATGGCGTTGAAGAGGTA 775941
Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
|||| | | || | |||||||| ||||| | |||||| || | || || ||
Sbjct 775942 CCTGCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGCAGAGAGTAGGTCTCTGAGTG 776001
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
|| |||||||| |||||||| |||||||| |||| || || | ||| || |||||
Sbjct 776002 AACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGTACTTC 776061
Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519
||| |||| ||| || || || || ||||| || |||||||| ||||| || || ||
Sbjct 776062 GCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAGAAGGC 776121
Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTTATCCCAATCGGATAG 93576
| | || || || ||| ||||| || | |||| | ||| ||| ||
Sbjct 776122 GAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTCCAGTCGTGAAG 776181
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636
|| || || || |||| || || | ||||| || || || || || || ||||||||
Sbjct 776182 GTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 776241
Query 93637 ATCCCA 93642
| |||
Sbjct 776242 CTGCCA 776247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860250099960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |