Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10 118 9e-22 seq14 86.0 5e-12 seq13 82.4 6e-11 >seq10 Length=1117896 Score = 118 bits (130), Expect = 9e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||||||||| || || | |||| ||| | ||| | |||| | Sbjct 914860 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 914919 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 914920 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 914979 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | ||||| ||||||| | ||||| ||||||||||| || || ||||| Sbjct 914980 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCAC 915032 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || |||||| | | | Sbjct 915064 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 915123 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||||||||| || || ||| Sbjct 915124 GACACTATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 915183 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||||| || || ||| || |||| || |||||| Sbjct 915184 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCAGACTACAAC 915243 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || || | ||||| || Sbjct 915244 ATCCAAAAGGAGTCTACACTTCATTTGGT 915272 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || |||| || | ||| || |||| Sbjct 914579 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTCAAGAGC 914638 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || | || || |||||||| Sbjct 914639 AAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 914698 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| | ||||| |||||||| || || ||||| ||| | ||| Sbjct 914699 CAGCTTGAGGATGGTCGCACCTTGTCCGACTACAACATCCAGAAGGAATCTACCCTGCAT 914758 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || | || |||||| Sbjct 914759 CTCGTCCTCCGCCTTCGTGGAGGT 914782 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || | || | ||||| || ||| | Sbjct 915292 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCCAGC 915351 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || ||||||||||||||||| || || || Sbjct 915352 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 915411 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | || || ||| || |||| || |||||| Sbjct 915412 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 915471 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 915472 ATCCAGAAGGAGTCTAC 915488 >seq14 Length=985265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || || || ||||| || || ||||| || ||| | || Sbjct 862858 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGA 862917 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| |||||| | || || |||||||| || || || |||||| | || || || Sbjct 862918 GGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGT 862974 >seq13 Length=1001457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || ||||| || || || || ||||| || Sbjct 407332 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGAAAG 407273 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| |||||| | ||||| |||||||| || || || || ||| | || Sbjct 407272 CAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACCCTCCAC 407213 Query 22423 TTAGT 22427 || || Sbjct 407212 TTGGT 407208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727595880635