Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 105 1e-17 seq18 91.5 3e-13 seq10 84.2 4e-11 >seq2 Length=1797335 Score = 105 bits (116), Expect = 1e-17 Identities = 171/244 (70%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || ||||| |||||||||||||| || | | || || || || || Sbjct 716774 GTCGGCTCTCTATCTGGTGGATGGAAGATGAAGCTCGCTTTGGCGCGTGCTATGCTTATG 716715 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || ||||| || || || || || || || ||||||||| |||| ||||||| ||| Sbjct 716714 CGCGCCGACGTGCTTCTTCTCGACGAACCCACCAACCACTTGGATGTTGCCAACGTTGCC 716655 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGA-----AGAATGTTTCTTCCCTCATTGTCTCTC 279870 ||||| | ||||| | ||||| | ||| || || | | || ||||||| Sbjct 716654 TGGCTCGGAAAGTACCT--CAAGTCTCACACCGAGA---TTACTAGCTTGATCGTCTCTC 716600 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 ||||||| || ||||| || | || ||| | | |||| ||||| |||||||| || Sbjct 716599 ACGACTCCGGTTTCCTTGACGAGGTCTGCACAGACATCTACCACTACGAGCAAAA---GA 716543 Query 279931 AGCT 279934 |||| Sbjct 716542 AGCT 716539 Score = 104 bits (114), Expect = 5e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 ||||| |||| ||||| ||||| ||||| || || || | || |||||||||| | | Sbjct 716294 ATTGGCGCCAACGGTGCTGGTAAATCTACTCTCATTAAGATGCTTACTGGCGAGA-CTAT 716236 Query 280236 GCCAC-TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 || | ||||| |||| |||||| |||||| |||| || | |||| || ||||| Sbjct 716235 TCCTCAAGAGGGTACCGTCGAGAAGCACCCCAACTTGCGTATCGGTTACATCAAGCAGCA 716176 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 |||| || | ||| |||||| ||| |||| | ||| || |||||||| | || ||||| Sbjct 716175 CGCTCTCGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAATATCTCCAATGGCG 716116 Query 280355 CTATGC 280360 || || Sbjct 716115 ATACGC 716110 >seq18 Length=821743 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437 || || |||| ||||||||||| ||| |||| ||| |||||||||| | || Sbjct 546356 GCCTACGGTGCTAAGATTCTGCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGCGT 546297 Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497 || |||||| |||| ||||| || | || |||| |||||| |||||||| || ||| Sbjct 546296 TACGGTCTCCTCGGACCCAACGGTTCCGGAAAGACCACTCTCATGCGCGCTATCAACAAC 546237 Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557 | ||| | || || || || || | ||||| | ||| || || || ||||||||| Sbjct 546236 GAGCAGGTCGAGGGTTTCCCCAAGCAAAACGAGGTCAAGACCGTCTACGTCGAGCACGAC 546177 Query 279558 ATCGACTC 279565 | ||||| Sbjct 546176 TTGGACTC 546169 >seq10 Length=1117896 Score = 84.2 bits (92), Expect = 4e-11 Identities = 226/342 (66%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||| | ||||||| ||||| |||||||| | |||| | ||| || |||||| Sbjct 431815 GACTTCGTAAACAAGGAACTCATCCTTTTCTCAATGGCTGATAACGTGCGATCGATTCCC 431874 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 ||| || ||||| || ||||| ||||| ||| | || | | || |||| ||| Sbjct 431875 TCCGTTGTCGATGGTCTGAAGCCCGGTCAGCGAAAGGTTCTGTATACCTGTTTCAGGCGA 431934 Query 218638 AACCTGGTTCAAGAAA----TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| | ||||||| | ||||||| | || || | |||| || || | | | Sbjct 431935 AACAT----CAAGAAAGATGTCAAGGTCGTTGAGCTTGCAGGTTCCGTCTCTGGATCCAC 431990 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCT--GCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751 | ||| ||||||||| || ||| ||| || | ||||| | | || ||| || Sbjct 431991 CGACTATGCTCACGGTGA--AGCTTCTATGCAAGGAACTATTGTCAACCTTGCGCAGAAC 432048 Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTA 218811 | ||| || | |||||||| |||| || |||| ||| | || ||||| ||||| Sbjct 432049 TTTGTCGGTACCAACAACATCAACTACCTTGAGCCCAGTGGTAACTTCGGTTCGCGTCTC 432108 Query 218812 TTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACA 218853 |||||| ||| ||| |||||||||| |||||| Sbjct 432109 AAGGGTGGTGCCGATGCTGCCAGCGCCAGGTATA--TTTACA 432148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835759636439