Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 1e-17
seq18 91.5 3e-13
seq10 84.2 4e-11
>seq2
Length=1797335
Score = 105 bits (116), Expect = 1e-17
Identities = 171/244 (70%), Gaps = 13/244 (5%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || ||||| || ||||| |||||||||||||| || | | || || || || ||
Sbjct 716774 GTCGGCTCTCTATCTGGTGGATGGAAGATGAAGCTCGCTTTGGCGCGTGCTATGCTTATG 716715
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|| ||||| || || || || || || || ||||||||| |||| ||||||| |||
Sbjct 716714 CGCGCCGACGTGCTTCTTCTCGACGAACCCACCAACCACTTGGATGTTGCCAACGTTGCC 716655
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGA-----AGAATGTTTCTTCCCTCATTGTCTCTC 279870
||||| | ||||| | ||||| | ||| || || | | || |||||||
Sbjct 716654 TGGCTCGGAAAGTACCT--CAAGTCTCACACCGAGA---TTACTAGCTTGATCGTCTCTC 716600
Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930
||||||| || ||||| || | || ||| | | |||| ||||| |||||||| ||
Sbjct 716599 ACGACTCCGGTTTCCTTGACGAGGTCTGCACAGACATCTACCACTACGAGCAAAA---GA 716543
Query 279931 AGCT 279934
||||
Sbjct 716542 AGCT 716539
Score = 104 bits (114), Expect = 5e-17
Identities = 136/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235
||||| |||| ||||| ||||| ||||| || || || | || |||||||||| | |
Sbjct 716294 ATTGGCGCCAACGGTGCTGGTAAATCTACTCTCATTAAGATGCTTACTGGCGAGA-CTAT 716236
Query 280236 GCCAC-TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294
|| | ||||| |||| |||||| |||||| |||| || | |||| || |||||
Sbjct 716235 TCCTCAAGAGGGTACCGTCGAGAAGCACCCCAACTTGCGTATCGGTTACATCAAGCAGCA 716176
Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354
|||| || | ||| |||||| ||| |||| | ||| || |||||||| | || |||||
Sbjct 716175 CGCTCTCGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAATATCTCCAATGGCG 716116
Query 280355 CTATGC 280360
|| ||
Sbjct 716115 ATACGC 716110
>seq18
Length=821743
Score = 91.5 bits (100), Expect = 3e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437
|| || |||| ||||||||||| ||| |||| ||| |||||||||| | ||
Sbjct 546356 GCCTACGGTGCTAAGATTCTGCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGCGT 546297
Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497
|| |||||| |||| ||||| || | || |||| |||||| |||||||| || |||
Sbjct 546296 TACGGTCTCCTCGGACCCAACGGTTCCGGAAAGACCACTCTCATGCGCGCTATCAACAAC 546237
Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557
| ||| | || || || || || | ||||| | ||| || || || |||||||||
Sbjct 546236 GAGCAGGTCGAGGGTTTCCCCAAGCAAAACGAGGTCAAGACCGTCTACGTCGAGCACGAC 546177
Query 279558 ATCGACTC 279565
| |||||
Sbjct 546176 TTGGACTC 546169
>seq10
Length=1117896
Score = 84.2 bits (92), Expect = 4e-11
Identities = 226/342 (66%), Gaps = 14/342 (4%)
Strand=Plus/Plus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|||||| | ||||||| ||||| |||||||| | |||| | ||| || ||||||
Sbjct 431815 GACTTCGTAAACAAGGAACTCATCCTTTTCTCAATGGCTGATAACGTGCGATCGATTCCC 431874
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
||| || ||||| || ||||| ||||| ||| | || | | || |||| |||
Sbjct 431875 TCCGTTGTCGATGGTCTGAAGCCCGGTCAGCGAAAGGTTCTGTATACCTGTTTCAGGCGA 431934
Query 218638 AACCTGGTTCAAGAAA----TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693
||| | ||||||| | ||||||| | || || | |||| || || | | |
Sbjct 431935 AACAT----CAAGAAAGATGTCAAGGTCGTTGAGCTTGCAGGTTCCGTCTCTGGATCCAC 431990
Query 218694 TGGCTACCATCACGGTGAGCAGAGTCT--GCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751
| ||| ||||||||| || ||| ||| || | ||||| | | || ||| ||
Sbjct 431991 CGACTATGCTCACGGTGA--AGCTTCTATGCAAGGAACTATTGTCAACCTTGCGCAGAAC 432048
Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTA 218811
| ||| || | |||||||| |||| || |||| ||| | || ||||| |||||
Sbjct 432049 TTTGTCGGTACCAACAACATCAACTACCTTGAGCCCAGTGGTAACTTCGGTTCGCGTCTC 432108
Query 218812 TTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACA 218853
|||||| ||| ||| |||||||||| ||||||
Sbjct 432109 AAGGGTGGTGCCGATGCTGCCAGCGCCAGGTATA--TTTACA 432148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835759636439
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |