Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq5 199 7e-46
seq10 176 8e-39
>seq5
Length=1540376
Score = 199 bits (220), Expect = 7e-46
Identities = 575/868 (66%), Gaps = 29/868 (3%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||| || ||||||||||| || || || |||||||||||||| ||| || |
Sbjct 775390 CATGACACCAGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGC 775449
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| |||||| |||||||||||| |||||||| |||| | |||| || ||
Sbjct 775450 CAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCC 775509
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || | | |||||||| |||||||||||||| |||| ||| || | |||
Sbjct 775510 GAGGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTT 775569
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|||||| | || ||| || | ||||||| | ||| |||| || | |||| ||
Sbjct 775570 CATGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGC 775629
Query 10175 TTCCTCGACGAT-GCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACA 10233
||| || ||| |||| | || || || ||||||||||||| || | |
Sbjct 775630 TTCAGTGATGATAGCTC-TGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGAAGA 775688
Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293
| || | || | ||| | ||||||||| ||| ||||| ||||||||| ||
Sbjct 775689 GAAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATG 775748
Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353
||||||||||| || || || || |||||||| |||| | ||| || ||| ||
Sbjct 775749 TTAGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGA 775808
Query 10354 ACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA---GGAGCGGTCGC 10410
| | | |||||| || | | || || ||||| | ||||| |||| | |
Sbjct 775809 AGAAGATACCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGAGTTCTTGT 775868
Query 10411 GCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAG 10470
|| | || | |||||| | |||||||| | | | ||||| | ||||| |
Sbjct 775869 CGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGG 775928
Query 10471 CCTCGAAGAG---CTTGTTACGCTCGGTCTCGTCCTCA-ATAAGAGCATCAAGGAGCAGG 10526
| | |||||| | || ||| || |||| || | || | | || | ||||||
Sbjct 775929 CGTTGAAGAGGTACCTGCGCTGCTTGGGCTCG--CTGATGTATGTG--TCGATGAGCAGA 775984
Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGC 10585
||||| ||| ||| ||| |||| | ||| || ||||||| ||| |||||
Sbjct 775985 GAGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCAT-CGTGC 776043
Query 10586 CGAGGGG-TCCGTGACTTC-CTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCACCATGCC 10642
| |||| | || ||||| || | | | | | | | |||||||| | || |||||
Sbjct 776044 CTCGGGGATTTGT-ACTTCGCTAG--AGAATCGCTCAACAAGGTTCTCGTTGACAATGCC 776100
Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG 10702
|||| | |||| |||||| |||||| ||| ||||||| |||||| |||||||| ||
Sbjct 776101 ATCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAG 776160
Query 10703 ----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758
|| || |||||| | |||| | ||| | || |||||| |||||||||
Sbjct 776161 ACGCTTGTT----CCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGA 776216
Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786
||| || |||||||||||||||||||
Sbjct 776217 AAGAAGCCTCGGCCTTCTTGTACATCTG 776244
>seq10
Length=1117896
Score = 176 bits (194), Expect = 8e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| || || || ||||| ||||||||||| || || |||
Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| |||||||| |||||||| ||||| | |||||||| || |||
Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| | ||||||| || || ||||| |||||| ||
Sbjct 915170 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 915111
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || || |||||||||||||| || |||||
Sbjct 915110 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 167 bits (184), Expect = 4e-36
Identities = 176/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || ||||| || | |||||||| || || ||||| || |||||||| || || ||
Sbjct 915519 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 915460
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||| || | || ||||| | |||||| || ||||| ||||| | || ||||| || ||
Sbjct 915459 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 915400
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTA 68412
||| || |||||||| || ||||| | ||| || ||||| ||||| |||| | || |
Sbjct 915399 AATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTC-GCTGGACTCGA 915341
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||| || ||||| ||||| || || ||||||||||| ||||||||
Sbjct 915340 CTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Score = 127 bits (140), Expect = 4e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| | |||||||| || || ||||| || |||||
Sbjct 915062 CCACCACGCAGGCGGAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGAC 915003
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||| |||||||| || || | ||| || || || ||
Sbjct 915002 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 914943
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||||| ||||||| ||||||||||| | ||| || ||
Sbjct 914942 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 914883
Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437
|| | |||||||| || || ||
Sbjct 914882 TCAAGAGTGATGGTCTTGCCGGT 914860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621489897880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |