Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 199 7e-46 seq10 176 8e-39 >seq5 Length=1540376 Score = 199 bits (220), Expect = 7e-46 Identities = 575/868 (66%), Gaps = 29/868 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| ||| || | Sbjct 775390 CATGACACCAGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGC 775449 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || |||||| |||||||||||| |||||||| |||| | |||| || || Sbjct 775450 CAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCC 775509 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | |||||||| |||||||||||||| |||| ||| || | ||| Sbjct 775510 GAGGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTT 775569 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || ||| || | ||||||| | ||| |||| || | |||| || Sbjct 775570 CATGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGC 775629 Query 10175 TTCCTCGACGAT-GCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACA 10233 ||| || ||| |||| | || || || ||||||||||||| || | | Sbjct 775630 TTCAGTGATGATAGCTC-TGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGAAGA 775688 Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293 | || | || | ||| | ||||||||| ||| ||||| ||||||||| || Sbjct 775689 GAAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATG 775748 Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353 ||||||||||| || || || || |||||||| |||| | ||| || ||| || Sbjct 775749 TTAGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGA 775808 Query 10354 ACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA---GGAGCGGTCGC 10410 | | | |||||| || | | || || ||||| | ||||| |||| | | Sbjct 775809 AGAAGATACCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGAGTTCTTGT 775868 Query 10411 GCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAG 10470 || | || | |||||| | |||||||| | | | ||||| | ||||| | Sbjct 775869 CGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGG 775928 Query 10471 CCTCGAAGAG---CTTGTTACGCTCGGTCTCGTCCTCA-ATAAGAGCATCAAGGAGCAGG 10526 | | |||||| | || ||| || |||| || | || | | || | |||||| Sbjct 775929 CGTTGAAGAGGTACCTGCGCTGCTTGGGCTCG--CTGATGTATGTG--TCGATGAGCAGA 775984 Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGC 10585 ||||| ||| ||| ||| |||| | ||| || ||||||| ||| ||||| Sbjct 775985 GAGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCAT-CGTGC 776043 Query 10586 CGAGGGG-TCCGTGACTTC-CTCGGCAAAGTTGTTGTTC-AGGTTCTCCATCACCATGCC 10642 | |||| | || ||||| || | | | | | | | |||||||| | || ||||| Sbjct 776044 CTCGGGGATTTGT-ACTTCGCTAG--AGAATCGCTCAACAAGGTTCTCGTTGACAATGCC 776100 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG 10702 |||| | |||| |||||| |||||| ||| ||||||| |||||| |||||||| || Sbjct 776101 ATCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAG 776160 Query 10703 ----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 || || |||||| | |||| | ||| | || |||||| ||||||||| Sbjct 776161 ACGCTTGTT----CCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGA 776216 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786 ||| || ||||||||||||||||||| Sbjct 776217 AAGAAGCCTCGGCCTTCTTGTACATCTG 776244 >seq10 Length=1117896 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || || || ||||| ||||||||||| || || ||| Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| |||||||| |||||||| ||||| | |||||||| || ||| Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| || || ||||| |||||| || Sbjct 915170 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 915111 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || |||||||||||||| || ||||| Sbjct 915110 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 167 bits (184), Expect = 4e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | |||||||| || || ||||| || |||||||| || || || Sbjct 915519 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 915460 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || ||||| | |||||| || ||||| ||||| | || ||||| || || Sbjct 915459 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 915400 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTA 68412 ||| || |||||||| || ||||| | ||| || ||||| ||||| |||| | || | Sbjct 915399 AATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTC-GCTGGACTCGA 915341 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| || ||||| ||||| || || ||||||||||| |||||||| Sbjct 915340 CTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| | |||||||| || || ||||| || ||||| Sbjct 915062 CCACCACGCAGGCGGAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGAC 915003 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | ||| || || || || Sbjct 915002 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 914943 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||||| ||||||| ||||||||||| | ||| || || Sbjct 914942 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 914883 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| || || || Sbjct 914882 TCAAGAGTGATGGTCTTGCCGGT 914860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621489897880