Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 338 1e-87 seq16 253 4e-62 >seq5 Length=1540376 Score = 338 bits (374), Expect = 1e-87 Identities = 600/861 (70%), Gaps = 32/861 (4%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 776249 TCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCT 776190 Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||| | | |||| | || |||| || ||| || Sbjct 776189 CCAAGGACCTTCACGACTGGAACAAGC-GTCTCAACGATGACGAGCGCTTCTTCATCTCC 776131 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||| ||||| || ||||| ||||| |||||||| | | Sbjct 776130 CACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGA 776071 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 ||| | || || || | ||||| || ||||||||||| ||||| || || Sbjct 776070 TTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 776011 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593 |||||||| ||||| ||| ||| | ||||||| |||| |||||| || ||| Sbjct 776010 GAGAACGTTCACTCAGAGACCTACTCT---CTGCTCATCGACACATACATCAGCGAGCCC 775954 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 |||| | || ||||| ||||| || | || ||||||||| |||||||| Sbjct 775953 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 775894 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| || |||||| | | || | | || |||| | | | || || || Sbjct 775893 GACTGGGCCCTGCGATGGATCTCC-GACAAGAACTCCACATTCGCCAACCGCCTTGTTGC 775835 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 || |||| || ||||| ||||||||| || | ||||||||||||||||||||||| Sbjct 775834 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 775775 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| | ||||||||| || || ||||| ||||| |||||| | | ||||||| Sbjct 775774 GAAGCGCGGTCT-GATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGG 775716 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | |||| | ||||| |||||||| || ||||| | |||| | |||||||| Sbjct 775715 GCATGCACACCGACTTCGCCTGCCTTCTCTTCTC---TCTCCTCGAGAACAAGCCCAGCC 775659 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 ||| ||| | || |||||||| || ||||| ||||| ||| |||||||| | | Sbjct 775658 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 775599 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAG 43010 | | || || | ||| |||||||||| | | || ||||||||| | |||||| || Sbjct 775598 ACGCACTACCATGCGCTCTGCTCGGCATGAA-CGCTACTCTCATGTGCCAATACATCGAG 775540 Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACG 43064 | |||||| |||| ||| |||| ||| ||| || || | ||||| || | Sbjct 775539 TTCGTCGCTGACCGTCTGCTGT------TGGCCCTCGGCAACGTCAAGGTCTACCACGCC 775486 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 | |||||||||||| ||||||||||| || ||| || ||||||||||| |||||| Sbjct 775485 ACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAG 775426 Query 43125 AAGCGCGTCGCCGACTACCAG 43145 |||||||||| |||||||||| Sbjct 775425 AAGCGCGTCGGCGACTACCAG 775405 >seq16 Length=840418 Score = 253 bits (280), Expect = 4e-62 Identities = 517/761 (68%), Gaps = 18/761 (2%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| || || ||||| || | |||||||| |||||||| ||||| ||| Sbjct 26671 GCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGG 26730 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || |||||| || |||| || || ||| |||| |||||| ||||||||| Sbjct 26731 TTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTG 26790 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 |||||||| ||||| || |||||| ||| || | |||| | || ||| || | Sbjct 26791 TAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTT 26850 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC--CTCGTAGCGGGTGTACAGGGCCT 244925 || || ||| |||| ||||| ||||| |||||||| |||||| || | Sbjct 26851 TGTGCGCGAACAGTCTCGCGACCCTTGT--TCTGCTTCTCGTAGCTCTCGTACAGAGCTT 26908 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 |||| || || |||| ||| | ||||| |||||| ||||||||| || ||| Sbjct 26909 CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCC 26968 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | | |||| ||| | || | || |||||||||||| || ||||| || || | ||||| Sbjct 26969 AGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGA 27028 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | ||| ||| ||| |||||| | ||| || | ||| |||||| Sbjct 27029 GATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGA 27088 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| ||||||| ||||| | ||||| |||| ||| || || ||||||||||| |||| Sbjct 27089 CGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCT 27148 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | ||||| |||| | | || || | || | | || ||| Sbjct 27149 GGTCGA----CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTA 27204 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGGAC 245278 || ||||| ||||| |||||| | ||| | || | || || ||| | | Sbjct 27205 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGG-TGC--ACGTTG 27261 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | ||| | ||||| ||| ||||||||| | || ||| |||||| ||||| ||| Sbjct 27262 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 27321 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || || ||||||||| |||||||| || || ||||| || |||| || || || Sbjct 27322 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 27381 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||| || |||||||| || || |||||| || ||||| Sbjct 27382 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 27422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338267465040