Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq5 338 1e-87
seq16 253 4e-62
>seq5
Length=1540376
Score = 338 bits (374), Expect = 1e-87
Identities = 600/861 (70%), Gaps = 32/861 (4%)
Strand=Plus/Minus
Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360
||||| |||||||||||||| || || ||||||||| |||||||| |||||
Sbjct 776249 TCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCT 776190
Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAA 42416
|||||||| || |||| | | |||| | || |||| || ||| ||
Sbjct 776189 CCAAGGACCTTCACGACTGGAACAAGC-GTCTCAACGATGACGAGCGCTTCTTCATCTCC 776131
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|| | || ||||||||||| ||||| || ||||| ||||| |||||||| | |
Sbjct 776130 CACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGA 776071
Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
||| | || || || | ||||| || ||||||||||| ||||| || ||
Sbjct 776070 TTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 776011
Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593
|||||||| ||||| ||| ||| | ||||||| |||| |||||| || |||
Sbjct 776010 GAGAACGTTCACTCAGAGACCTACTCT---CTGCTCATCGACACATACATCAGCGAGCCC 775954
Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653
|||| | || ||||| ||||| || | || ||||||||| ||||||||
Sbjct 775953 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 775894
Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712
|||||||| || |||||| | | || | | || |||| | | | || || ||
Sbjct 775893 GACTGGGCCCTGCGATGGATCTCC-GACAAGAACTCCACATTCGCCAACCGCCTTGTTGC 775835
Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772
|| |||| || ||||| ||||||||| || | |||||||||||||||||||||||
Sbjct 775834 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 775775
Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831
| || ||| | ||||||||| || || ||||| ||||| |||||| | | |||||||
Sbjct 775774 GAAGCGCGGTCT-GATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGG 775716
Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891
| |||| | ||||| |||||||| || ||||| | |||| | ||||||||
Sbjct 775715 GCATGCACACCGACTTCGCCTGCCTTCTCTTCTC---TCTCCTCGAGAACAAGCCCAGCC 775659
Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951
||| ||| | || |||||||| || ||||| ||||| ||| |||||||| | |
Sbjct 775658 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 775599
Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAG 43010
| | || || | ||| |||||||||| | | || ||||||||| | |||||| ||
Sbjct 775598 ACGCACTACCATGCGCTCTGCTCGGCATGAA-CGCTACTCTCATGTGCCAATACATCGAG 775540
Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACG 43064
| |||||| |||| ||| |||| ||| ||| || || | ||||| || |
Sbjct 775539 TTCGTCGCTGACCGTCTGCTGT------TGGCCCTCGGCAACGTCAAGGTCTACCACGCC 775486
Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124
| |||||||||||| ||||||||||| || ||| || ||||||||||| ||||||
Sbjct 775485 ACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAG 775426
Query 43125 AAGCGCGTCGCCGACTACCAG 43145
|||||||||| ||||||||||
Sbjct 775425 AAGCGCGTCGGCGACTACCAG 775405
>seq16
Length=840418
Score = 253 bits (280), Expect = 4e-62
Identities = 517/761 (68%), Gaps = 18/761 (2%)
Strand=Plus/Plus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747
|||| |||||| || || ||||| || | |||||||| |||||||| ||||| |||
Sbjct 26671 GCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGG 26730
Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807
|| || |||||| || |||| || || ||| |||| |||||| |||||||||
Sbjct 26731 TTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTG 26790
Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867
|||||||| ||||| || |||||| ||| || | |||| | || ||| || |
Sbjct 26791 TAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTT 26850
Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC--CTCGTAGCGGGTGTACAGGGCCT 244925
|| || ||| |||| ||||| ||||| |||||||| |||||| || |
Sbjct 26851 TGTGCGCGAACAGTCTCGCGACCCTTGT--TCTGCTTCTCGTAGCTCTCGTACAGAGCTT 26908
Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985
|||| || || |||| ||| | ||||| |||||| ||||||||| || |||
Sbjct 26909 CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCC 26968
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| | |||| ||| | || | || |||||||||||| || ||||| || || | |||||
Sbjct 26969 AGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGA 27028
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
| || | | | ||| ||| ||| |||||| | ||| || | ||| ||||||
Sbjct 27029 GATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGA 27088
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
|||| ||||||| ||||| | ||||| |||| ||| || || ||||||||||| ||||
Sbjct 27089 CGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCT 27148
Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221
|||| | | | ||||| |||| | | || || | || | | || |||
Sbjct 27149 GGTCGA----CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTA 27204
Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGGAC 245278
|| ||||| ||||| |||||| | ||| | || | || || ||| | |
Sbjct 27205 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGG-TGC--ACGTTG 27261
Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338
| ||| | ||||| ||| ||||||||| | || ||| |||||| ||||| |||
Sbjct 27262 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 27321
Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398
|| || ||||||||| |||||||| || || ||||| || |||| || || ||
Sbjct 27322 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 27381
Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439
||| || |||||||| || || |||||| || |||||
Sbjct 27382 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 27422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338267465040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |