Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq10 161 2e-34
seq5 104 6e-17
>seq10
Length=1117896
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | ||||| || || |||||||| || ||||| | |
Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || |||||||| || || ||||| |||||||| ||||||||||| ||
Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || |||| || ||||| || |||| ||||| ||||| ||
Sbjct 915170 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 915111
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||||||||| ||||| || ||||| ||||||||||| || |||||
Sbjct 915110 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | |||||| || |||||||| | || || || ||||||
Sbjct 915482 TCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAG 915423
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || || || || || || |||||||| || | || || ||
Sbjct 915422 ATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG 915363
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||||| || || ||||| | || || ||||| ||||| ||||||||||||
Sbjct 915362 TCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACG 915303
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 915302 AAGATCTGCAT 915292
>seq5
Length=1540376
Score = 104 bits (114), Expect = 6e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178
|||||| | | ||||| | ||||| || || |||| ||||| || |||||||
Sbjct 775611 GAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGC 775552
Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238
||||| ||||| ||||| ||||| ||| | | ||| ||||| | | || || |||
Sbjct 775551 CAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTAC 775492
Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298
| | | || ||||||| ||| ||||| ||||| || | || ||||| ||||||
Sbjct 775491 CACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTC 775432
Query 269299 TTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340
||||| ||||| ||| ||||||| || ||||||| |||
Sbjct 775431 TTCGAGAAGCGCGTCGGCGACTACCAGAAGGCTGGTGTCATG 775390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653205968562
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |