Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10 161 2e-34 seq5 104 6e-17 >seq10 Length=1117896 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||||| || || |||||||| || ||||| | | Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| || || ||||| |||||||| ||||||||||| || Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || |||| || ||||| || |||| ||||| ||||| || Sbjct 915170 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 915111 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 915110 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | |||||| || |||||||| | || || || |||||| Sbjct 915482 TCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAG 915423 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || || || || || || |||||||| || | || || || Sbjct 915422 ATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG 915363 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| || || ||||| | || || ||||| ||||| |||||||||||| Sbjct 915362 TCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACG 915303 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 915302 AAGATCTGCAT 915292 >seq5 Length=1540376 Score = 104 bits (114), Expect = 6e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178 |||||| | | ||||| | ||||| || || |||| ||||| || ||||||| Sbjct 775611 GAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGC 775552 Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238 ||||| ||||| ||||| ||||| ||| | | ||| ||||| | | || || ||| Sbjct 775551 CAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTAC 775492 Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298 | | | || ||||||| ||| ||||| ||||| || | || ||||| |||||| Sbjct 775491 CACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTC 775432 Query 269299 TTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 ||||| ||||| ||| ||||||| || ||||||| ||| Sbjct 775431 TTCGAGAAGCGCGTCGGCGACTACCAGAAGGCTGGTGTCATG 775390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653205968562