Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 125 2e-23 >seq5 Length=1540376 Score = 125 bits (138), Expect = 2e-23 Identities = 291/437 (67%), Gaps = 4/437 (1%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 ||||| ||||| | || ||| |||| | ||||||| ||||| ||| ||| Sbjct 775824 GTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGT 775765 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 ||||||| || || | || |||||| ||||| || ||||||||| | ||| Sbjct 775764 CTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACC 775705 Query 243439 CAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAA--CGGTCA 243496 | |||| ||| | | || ||| ||||||||| ||| | | | | |||| Sbjct 775704 GACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGC--CCAGCCCAGAGTCTGTCA 775647 Query 243497 AACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCAT 243556 | |||||||| ||||| || || | || |||| ||| | ||||||| | |||| Sbjct 775646 GAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCAT 775587 Query 243557 GCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACC 243616 || || | ||||||||| || |||||| | || |||||||| ||||| || |||| Sbjct 775586 GCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACC 775527 Query 243617 GCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTA 243676 | | | | || || || | | || || ||| || ||| |||||||| | ||| | Sbjct 775526 GTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCA 775467 Query 243677 TGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATC 243736 ||||| |||||| || || || || ||||||||||| ||||| ||| | || || | Sbjct 775466 TGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACC 775407 Query 243737 AACGCCCTGGTGTGATG 243753 | ||||||| ||| Sbjct 775406 AGAAGGCTGGTGTCATG 775390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878883678650