Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq16 250 3e-61 seq5 89.7 6e-13 >seq16 Length=840418 Score = 250 bits (276), Expect = 3e-61 Identities = 1110/1738 (64%), Gaps = 31/1738 (2%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||| |||||||| || |||||||| || ||||||| || | ||||| || | Sbjct 25789 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 25848 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | || || | |||| || ||| | || || || || ||||| Sbjct 25849 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 25908 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTTC 113774 ||||| || || ||||| ||||| | |||||| | ||| ||||| || || Sbjct 25909 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 25966 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATGGAGCCACCCGC 113832 |||| ||| |||| | || || ||||| | || || ||| || || || || | Sbjct 25967 TGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATCGAACCTCCATC 26024 Query 113833 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 113892 || || | | |||||| | || ||||| ||||| || | || |||| | Sbjct 26025 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAG 26084 Query 113893 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | ||| | ||||||| |||||||| |||||| || | |||||| ||| Sbjct 26085 CAACCATGGGT--TGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTG 26142 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||||||||| |||||||| ||||| |||| || || | |||||||| || ||| Sbjct 26143 GAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGC 26202 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 |||||||| ||||| || ||| || | ||| | || ||| ||||| || | Sbjct 26203 ATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGAC 26262 Query 114071 TCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||||||| || | || | || | | | ||||||||| ||||||||||||| | Sbjct 26263 GCCCAGTCCCAGAGGTCAG-TAGGTGTGACATT-CCACATATCGTACTGGAGGATACCCT 26320 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGC 114188 |||| | || ||||| || | |||| ||| || || ||| || | ||| | Sbjct 26321 GGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATG 26380 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 114248 | ||| || || || || || ||||| || || | || | ||| || | Sbjct 26381 AGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTT 26440 Query 114249 CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 114308 |||| || || || | || ||| | || |||| || |||||||| ||||| | Sbjct 26441 CGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCA 26500 Query 114309 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCC 114368 || || || || || | | || || || || || || || || Sbjct 26501 TACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGA 26560 Query 114369 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 114428 ||||| | | | || | || |||||| |||| ||||| ||| || ||||| | | Sbjct 26561 CCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGA 26620 Query 114429 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 114488 | ||||| || | || | | |||| | ||| ||||| | || |||| || | Sbjct 26621 AGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGC 26680 Query 114489 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 114548 | |||| | |||||| | | |||||||| | ||| || || |||| || || || Sbjct 26681 AAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGC 26740 Query 114549 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGT 114608 ||||| || | |||||| || || ||| ||| || || |||||||| ||||| Sbjct 26741 GGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAA 26800 Query 114609 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCA 114668 | || | || ||||| || || | || || || || | ||| | | || | | Sbjct 26801 AGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCGAA 26860 Query 114669 CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCAC 114728 |||| || | || || |||||| | ||| || ||||| || ||||||| Sbjct 26861 CAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCAC 26920 Query 114729 CCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCT 114788 | | | || | ||| || || || | ||||| | || | ||| | || | Sbjct 26921 CGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGT 26980 Query 114789 CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGC 114848 | | ||||||||||||||||||||| || ||||| ||||| |||||||||| ||| || Sbjct 26981 CTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGC 27040 Query 114849 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 114908 | | || || | || || || |||| || | ||| | | || || ||||||| Sbjct 27041 GGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 27100 Query 114909 ACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACAT 114962 | || || ||||| | |||| | | ||| |||| ||| |||||| |||| Sbjct 27101 ATGGCTCGAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACCCTGGTCGACAT 27157 Query 114963 ACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 115022 | | || ||| || |||| || ||||| ||||||| ||||| |||| || || | Sbjct 27158 AGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAG 27217 Query 115023 T-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080 | || |||| || ||| | | | || | | || | || | |||||||| || Sbjct 27218 TGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCC 27275 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 || ||| ||||| ||| || | |||| || |||| || |||||||| ||| Sbjct 27276 AGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTC 27335 Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200 |||| | |||| |||||||| |||||||||||| |||||| || |||||||| Sbjct 27336 CTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAA 27395 Query 115201 GAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGA 115259 | || || | ||||| |||| ||| ||| ||||| | ||||||||||| | | Sbjct 27396 CAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGATGG 27454 Query 115260 CGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 | ||||| || |||||||| || | | || ||||| | ||||| ||| || Sbjct 27455 CCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 27512 >seq5 Length=1540376 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||||||||||||||| || || ||||| || || ||||| ||||| |||||| Sbjct 775715 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 775774 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || ||||| ||||||||| ||||| ||| ||||| Sbjct 775775 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 775834 Query 126185 GCAA 126188 |||| Sbjct 775835 GCAA 775838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353010113320