Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10 145 8e-30 >seq10 Length=1117896 Score = 145 bits (160), Expect = 8e-30 Identities = 166/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | ||| ||||||||| || ||||| || | ||||| || | Sbjct 915279 ACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCC 915220 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | |||||| || ||||| ||||| ||||| ||||| | || | | |||||| Sbjct 915219 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 915160 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTG 42170 |||| ||| | || | |||| ||| | || |||||||| |||||||| |||| |||| Sbjct 915159 GTCC-TGAATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTG 915102 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| ||||| || || ||||| || ||||||||||| Sbjct 915101 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || |||||| || || ||||| || | || || || | Sbjct 915507 ACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCC 915448 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||||||||||||||| ||||| ||||||||||| | || | | |||||| Sbjct 915447 GTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 915388 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || || | | | | ||||||||| || || || || | || || Sbjct 915387 GTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAAT 915328 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || ||||| || ||||| ||||| Sbjct 915327 GGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212263577360