Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq10 145 8e-30
>seq10
Length=1117896
Score = 145 bits (160), Expect = 8e-30
Identities = 166/218 (76%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||||||| | ||| ||||||||| || ||||| || | ||||| || |
Sbjct 915279 ACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCC 915220
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || | |||||| || ||||| ||||| ||||| ||||| | || | | ||||||
Sbjct 915219 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 915160
Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTG 42170
|||| ||| | || | |||| ||| | || |||||||| |||||||| |||| ||||
Sbjct 915159 GTCC-TGAATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTG 915102
Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| ||||| || || ||||| || |||||||||||
Sbjct 915101 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 111 bits (122), Expect = 2e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | || |||||| || || ||||| || | || || || |
Sbjct 915507 ACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCC 915448
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || ||||||||||||||||| ||||| ||||||||||| | || | | ||||||
Sbjct 915447 GTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 915388
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || || | | | | ||||||||| || || || || | || ||
Sbjct 915387 GTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAAT 915328
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || || || ||||| || ||||| |||||
Sbjct 915327 GGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212263577360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |