Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq16 259 5e-64 >seq16 Length=840418 Score = 259 bits (286), Expect = 5e-64 Identities = 609/917 (66%), Gaps = 2/917 (0%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||||| ||||| || || || || || |||||| || | ||| Sbjct 27587 AACTACCAGTTCTTTGGTTTCAAGACACTCGAACGTTCATATCTCCTCCGCATAAACGGC 27528 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| ||||||| || || || |||| ||||| || || | || ||||||||| | Sbjct 27527 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGAT 27468 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| ||| | | | | | | ||||| | ||| | || ||| Sbjct 27467 GACATCGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 27408 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| ||||||||||||| || || ||||| ||||| || || ||||| || Sbjct 27407 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATC 27348 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| |||| ||| |||| ||||| |||||| ||||||| || Sbjct 27347 GAC-ATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGAT 27289 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || ||| || || || || ||| || ||| | | ||||| | || || || Sbjct 27288 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 27229 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| | || || || || || || || || ||| | || |||||||| || | |||||| Sbjct 27228 CATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAA 27169 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || ||||| || ||||||||||| | | | ||| | ||||| |||| || Sbjct 27168 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCT 27109 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| ||||| | ||| | |||||||| |||||||||||||| || Sbjct 27108 CGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGA 27049 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | || |||||||||||||| ||| | || ||||| || ||||| || Sbjct 27048 GGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCG 26989 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || | | ||| | ||||| || | || || || || || || || || |||| Sbjct 26988 TGTTCAAGACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGA 26929 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || | || || |||| |||| | | ||||| |||| ||||| | Sbjct 26928 TGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGTCG 26869 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 || | | || ||||| ||| | ||| | || | |||| ||||| || Sbjct 26868 CGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGG 26809 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || |||| || | | ||||||| || |||| |||| ||||||| || ||||||| Sbjct 26808 TAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 26749 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || |||||||| |||||||| ||||| || |||| || ||| | Sbjct 26748 TACCATCCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGT 26689 Query 94614 TGCTGTGTGTAACCTGG 94630 ||||| || ||| ||| Sbjct 26688 CGCTGTTTGCAACTTGG 26672 Score = 100 bits (110), Expect = 3e-16 Identities = 207/302 (69%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||| ||| ||||||| | || |||||||| || |||||||| | ||||| Sbjct 26237 CACGGTGTACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATT 26178 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||||||||||||| ||||| || | |||||||||| | || | | || || ||| Sbjct 26177 CTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTC 26118 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGT 95255 || || || |||| || ||||| | || ||||| || || | ||||| | Sbjct 26117 GCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGAC-ATGGGTCT 26059 Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACG--GCTCCG---TCCAGAAC 95310 |||| ||| || | ||||||| | | |||| | | | | || |||| Sbjct 26058 GTGGTCTGAGAACATGAAGAACCGTATCAT---CGCCGATGGAGGTTCGATTGCCAG--G 26004 Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370 || || | || || ||||| | ||| | || ||||||||||| ||||||||| ||||| Sbjct 26003 ATTCCCAACATCCCTGAGGAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAG 25944 Query 95371 CG 95372 || Sbjct 25943 CG 25942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722711460840