Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq16 259 5e-64
>seq16
Length=840418
Score = 259 bits (286), Expect = 5e-64
Identities = 609/917 (66%), Gaps = 2/917 (0%)
Strand=Plus/Minus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | | ||||| ||||| || || || || || |||||| || | |||
Sbjct 27587 AACTACCAGTTCTTTGGTTTCAAGACACTCGAACGTTCATATCTCCTCCGCATAAACGGC 27528
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| ||| ||||||| || || || |||| ||||| || || | || ||||||||| |
Sbjct 27527 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGAT 27468
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
||||| ||| | | | | | | ||||| | ||| | || |||
Sbjct 27467 GACATCGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 27408
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| ||||| ||||||||||||| || || ||||| ||||| || || ||||| ||
Sbjct 27407 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATC 27348
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | |||| ||| |||| ||| |||| ||||| |||||| ||||||| ||
Sbjct 27347 GAC-ATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGAT 27289
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || ||| || || || || ||| || ||| | | ||||| | || || ||
Sbjct 27288 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 27229
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
|||| | || || || || || || || || ||| | || |||||||| || | ||||||
Sbjct 27228 CATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAA 27169
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| | || ||||| || ||||||||||| | | | ||| | ||||| |||| ||
Sbjct 27168 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCT 27109
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
|||||| |||||||| ||||| | ||| | |||||||| |||||||||||||| ||
Sbjct 27108 CGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGA 27049
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
|| | || | || |||||||||||||| ||| | || ||||| || ||||| ||
Sbjct 27048 GGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCG 26989
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
|| | | ||| | ||||| || | || || || || || || || || ||||
Sbjct 26988 TGTTCAAGACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGA 26929
Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433
|| | || || |||| |||| | | ||||| |||| ||||| |
Sbjct 26928 TGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGTCG 26869
Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493
|| | | || ||||| ||| | ||| | || | |||| ||||| ||
Sbjct 26868 CGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGG 26809
Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553
|| |||| || | | ||||||| || |||| |||| ||||||| || |||||||
Sbjct 26808 TAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 26749
Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613
||| ||||| || |||||||| |||||||| ||||| || |||| || ||| |
Sbjct 26748 TACCATCCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGT 26689
Query 94614 TGCTGTGTGTAACCTGG 94630
||||| || ||| |||
Sbjct 26688 CGCTGTTTGCAACTTGG 26672
Score = 100 bits (110), Expect = 3e-16
Identities = 207/302 (69%), Gaps = 12/302 (4%)
Strand=Plus/Minus
Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136
|||||||| ||| ||||||| | || |||||||| || |||||||| | |||||
Sbjct 26237 CACGGTGTACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATT 26178
Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196
|| ||||||||||||| ||||| || | |||||||||| | || | | || || |||
Sbjct 26177 CTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTC 26118
Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGT 95255
|| || || |||| || ||||| | || ||||| || || | ||||| |
Sbjct 26117 GCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGAC-ATGGGTCT 26059
Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACG--GCTCCG---TCCAGAAC 95310
|||| ||| || | ||||||| | | |||| | | | | || ||||
Sbjct 26058 GTGGTCTGAGAACATGAAGAACCGTATCAT---CGCCGATGGAGGTTCGATTGCCAG--G 26004
Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370
|| || | || || ||||| | ||| | || ||||||||||| ||||||||| |||||
Sbjct 26003 ATTCCCAACATCCCTGAGGAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAG 25944
Query 95371 CG 95372
||
Sbjct 25943 CG 25942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494722711460840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |