Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq16 203 3e-47
seq5 145 8e-30
seq10 114 1e-20
seq13 89.7 5e-13
>seq16
Length=840418
Score = 203 bits (224), Expect = 3e-47
Identities = 973/1531 (64%), Gaps = 43/1531 (3%)
Strand=Plus/Plus
Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068
||||| | || ||| | ||||||| || || ||||| || || | || || | ||
Sbjct 26074 AGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAA 26133
Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128
|| | ||| ||| | || || ||| | ||||| ||||| || || || | ||||
Sbjct 26134 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAG 26193
Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188
|| || |||||| || | | || || || || | |||||| | ||| | |||
Sbjct 26194 GCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCC 26253
Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA-- 153246
|||| | | ||| ||||| || | | ||||| | |||||||| |||||||| |
Sbjct 26254 TTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGG 26313
Query 153247 ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCC--GTCGCGTTGGGC 153304
| || ||| | | ||||| || | | || |||| || || | ||| |
Sbjct 26314 ATAC-CCTGGGATA-CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCG- 26370
Query 153305 CAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAG 153364
| ||||| | ||| || ||| ||| ||||| ||| |||||| | |||||
Sbjct 26371 -ATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAG 26429
Query 153365 AACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACC 153424
||||| || |||| | || | ||| || | ||||| ||||| |||||
Sbjct 26430 CTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACC 26489
Query 153425 CTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGG 153483
|| | ||| | ||||||||||| || ||||||||| | || ||| | | |
Sbjct 26490 TTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAG 26548
Query 153484 GATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCT 153543
| ||||| ||| ||||| || ||||| | |||||| || || | || | | |
Sbjct 26549 GGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGT 26608
Query 153544 TAAGTTTCTCGAAATCATA------GGTCATTTCGTCGACGCGTACGCATCGATTCACGG 153597
|| |||| ||| ||| | || | | | |||||| | | || ||
Sbjct 26609 GGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAA------AAGAAGGCAGGG 26662
Query 153598 CAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGG 153657
||| ||| |||| || || || || ||| || | || |||||| ||| ||||| |
Sbjct 26663 CAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAG 26722
Query 153658 CGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACG 153717
||| |||||| || ||| || | || | ||| ||||| ||||| ||||| |
Sbjct 26723 TGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAG 26782
Query 153718 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACC 153774
|||| ||| ||||||| | || || |||||| || | || | ||| |||
Sbjct 26783 CGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACC 26842
Query 153775 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGT 153834
| || | || || || || || ||| | || ||||||| | |||||
Sbjct 26843 AAAGC---TTTTGTGCGCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGT 26899
Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894
|||| || || || || |||||| ||||||||||| || |||| | ||| ||||
Sbjct 26900 ACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACA 26959
Query 153895 TCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954
|||| | ||| | ||| | | | || || |||||| || || || | ||| || |
Sbjct 26960 TCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAG 27019
Query 153955 CGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATTGA 154011
|||| | ||| ||||| || | |||||| ||| | ||||| ||| | |
Sbjct 27020 CGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAA 27076
Query 154012 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC- 154070
| | || | ||| ||| |||||||| || || | ||||| ||| | ||||||| ||||
Sbjct 27077 GGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCT 27136
Query 154071 --TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCA 154128
|| || ||||| ||||| | ||| | | |||||| | || || | |||||| |
Sbjct 27137 TGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGA 27196
Query 154129 GGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCA 154188
| || | | || ||||| || | ||| | ||| || || | | ||||
Sbjct 27197 GACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCA 27256
Query 154189 CGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCGTCCT 154246
|||| | |||||| ||||| || ||| || || || |||| | | || ||
Sbjct 27257 CGTTGAGGCCAATACCGCCAGCGGTCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTC 27314
Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306
||| |||||||||||||| || || | | ||| | ||| || || ||||||| ||
Sbjct 27315 GTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGG 27374
Query 154307 -AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365
||| | || ||||| || | || || ||||| || || ||||| ||
Sbjct 27375 TGATG-GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACA 27433
Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425
| | ||| || |||||||| | ||||| ||||||||||||||||| | || || |
Sbjct 27434 TGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACAC 27493
Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCAT 154485
||||||||||||| || || || |||||||| | || || | ||||||| |
Sbjct 27494 GCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAAC 27553
Query 154486 TTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516
|||||| || ||| |||| || ||| |||
Sbjct 27554 GTTCGAGTGTCTTGAAACCAAAGAACTGGTA 27584
>seq5
Length=1540376
Score = 145 bits (160), Expect = 8e-30
Identities = 504/764 (66%), Gaps = 27/764 (4%)
Strand=Plus/Minus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||||||| || ||| ||||| | || |||||||| ||| ||||| ||
Sbjct 776157 AACGATGACGAGCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGC 776098
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGC---AGCGGAACGTTCCGGAACTCGAGGCG 52202
|| || ||| ||||| | ||| || | |||| | || | | ||||||
Sbjct 776097 ATTGTCAACGAGAACCTTGTTGAGCG-ATTCTCTAGCGAA--GTACAAATCCCCGAGGCA 776041
Query 52203 CAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTG 52262
| || ||| || ||| ||| | | || ||| ||| ||| | |||| ||| ||||
Sbjct 776040 CGATGCTTCTACGGTTTCCAAATCATGATGGAGAACGTTCACTCAGAGACCTACTCTCTG 775981
Query 52263 CTCATTGAGCAGCTGATAAAAGATGAGCACGAGC-GCGACACG---CTGCTGAATGCGTT 52318
||||| || || | | | || |||| | ||| ||| || | || | || || |
Sbjct 775980 CTCATCGA-CACAT-ACATCAGC-GAGCCCAAGCAGCG-CAGGTACCTCTTCAACGCCAT 775925
Query 52319 CGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGA 52378
||| || | || ||| | ||||| ||||| | ||||| || |||||| | |
Sbjct 775924 CGACAACATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAA 775865
Query 52379 CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC 52438
| | |||| | ||| | ||| | || || |||||| || ||||| | || ||
Sbjct 775864 GAACTCCACATTCGCCAACCGCCTTGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAG 775805
Query 52439 CGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTT 52498
||| || ||| ||||||| | | || | | || | |||||||| || || ||
Sbjct 775804 CGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATT 775745
Query 52499 CAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTA 52558
| ||||||| | || || || ||||| || ||||||| ||||| || ||||| ||
Sbjct 775744 CTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTT 775685
Query 52559 CAAGACGCGCGT-GACCGAAAAATTGGATTCG-GACACGATCCTGAGC-ATGTTCAAGGA 52615
| | | | | || ||| || | | || | || |||| || ||| ||
Sbjct 775684 CT---CTCTCCTCGA--GAACAAGCCCAGCCCAGAGTCTGTCA-GAGCTATCATCACTGA 775631
Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675
|| || | || || ||||||| || | | ||| || || || ||||| |||||
Sbjct 775630 AGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCAT 775571
Query 52676 GAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734
|||||| | || ||||||| | ||||||||||| || || || |||||| || || |
Sbjct 775570 GAACGCT-ACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCC 775512
Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793
|||| | | ||| || || | |||| ||| || || || || ||| | ||||||||
Sbjct 775511 TCGGCAACGTCAAGGT-CTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCT 775453
Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| | || ||||||||||| ||||||||||| |||||||| ||
Sbjct 775452 CTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 775409
>seq10
Length=1117896
Score = 114 bits (126), Expect = 1e-20
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | ||||||||||| |||||||||||
Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||| || | || || |||| |||| ||||||||||||||||||||
Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| | || | || | ||| || | |||||| | || ||||
Sbjct 915170 ATACCCTCCTTGTC-CTGAATCTTCGACTTGACGTTG-TCAATAGTGTCGCTTGATTCCA 915113
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| ||| | || || |||||||| || || || || || |||||
Sbjct 915112 CCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || || || | | |||||||| || |||||||||||
Sbjct 915518 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 915459
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || || || ||||| | |||| |||||||| |||||||||||
Sbjct 915458 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 915399
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || |||| |||| || | |||||| | ||||| ||
Sbjct 915398 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG-TCGATCGTGTCGCTGGACTCGAC 915340
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || ||||| || || || ||||||||
Sbjct 915339 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Score = 89.7 bits (98), Expect = 5e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| || || || |||||||||||| || ||||
Sbjct 915029 GACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCG 914970
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || || || || |||||||| || || || ||||| ||| ||| || |
Sbjct 914969 AAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACG 914910
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592
| || | |||||||| ||||| ||||| | || | || || || ||||
Sbjct 914909 TTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 914858
>seq13
Length=1001457
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || || || | | |||||||||| || |||||||||||| |
Sbjct 407190 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 407249
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||||| || |||| |||| || |||||||||||||| ||
Sbjct 407250 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 407309
Query 138508 ATACCTTCTTTGTC 138521
|| || || |||||
Sbjct 407310 ATGCCCTCCTTGTC 407323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261909940880
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