Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq16 203 3e-47 seq5 145 8e-30 seq10 114 1e-20 seq13 89.7 5e-13 >seq16 Length=840418 Score = 203 bits (224), Expect = 3e-47 Identities = 973/1531 (64%), Gaps = 43/1531 (3%) Strand=Plus/Plus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || ||| | ||||||| || || ||||| || || | || || | || Sbjct 26074 AGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAA 26133 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||| ||| | || || ||| | ||||| ||||| || || || | |||| Sbjct 26134 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAG 26193 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188 || || |||||| || | | || || || || | |||||| | ||| | ||| Sbjct 26194 GCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCC 26253 Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA-- 153246 |||| | | ||| ||||| || | | ||||| | |||||||| |||||||| | Sbjct 26254 TTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGG 26313 Query 153247 ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCC--GTCGCGTTGGGC 153304 | || ||| | | ||||| || | | || |||| || || | ||| | Sbjct 26314 ATAC-CCTGGGATA-CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCG- 26370 Query 153305 CAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAG 153364 | ||||| | ||| || ||| ||| ||||| ||| |||||| | ||||| Sbjct 26371 -ATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAG 26429 Query 153365 AACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACC 153424 ||||| || |||| | || | ||| || | ||||| ||||| ||||| Sbjct 26430 CTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACC 26489 Query 153425 CTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGG 153483 || | ||| | ||||||||||| || ||||||||| | || ||| | | | Sbjct 26490 TTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAG 26548 Query 153484 GATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCT 153543 | ||||| ||| ||||| || ||||| | |||||| || || | || | | | Sbjct 26549 GGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGT 26608 Query 153544 TAAGTTTCTCGAAATCATA------GGTCATTTCGTCGACGCGTACGCATCGATTCACGG 153597 || |||| ||| ||| | || | | | |||||| | | || || Sbjct 26609 GGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAA------AAGAAGGCAGGG 26662 Query 153598 CAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGG 153657 ||| ||| |||| || || || || ||| || | || |||||| ||| ||||| | Sbjct 26663 CAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAG 26722 Query 153658 CGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACG 153717 ||| |||||| || ||| || | || | ||| ||||| ||||| ||||| | Sbjct 26723 TGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAG 26782 Query 153718 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACC 153774 |||| ||| ||||||| | || || |||||| || | || | ||| ||| Sbjct 26783 CGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACC 26842 Query 153775 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGT 153834 | || | || || || || || ||| | || ||||||| | ||||| Sbjct 26843 AAAGC---TTTTGTGCGCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGT 26899 Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894 |||| || || || || |||||| ||||||||||| || |||| | ||| |||| Sbjct 26900 ACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACA 26959 Query 153895 TCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954 |||| | ||| | ||| | | | || || |||||| || || || | ||| || | Sbjct 26960 TCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAG 27019 Query 153955 CGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATTGA 154011 |||| | ||| ||||| || | |||||| ||| | ||||| ||| | | Sbjct 27020 CGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAA 27076 Query 154012 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC- 154070 | | || | ||| ||| |||||||| || || | ||||| ||| | ||||||| |||| Sbjct 27077 GGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCT 27136 Query 154071 --TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCA 154128 || || ||||| ||||| | ||| | | |||||| | || || | |||||| | Sbjct 27137 TGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGA 27196 Query 154129 GGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCA 154188 | || | | || ||||| || | ||| | ||| || || | | |||| Sbjct 27197 GACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCA 27256 Query 154189 CGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCGTCCT 154246 |||| | |||||| ||||| || ||| || || || |||| | | || || Sbjct 27257 CGTTGAGGCCAATACCGCCAGCGGTCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTC 27314 Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306 ||| |||||||||||||| || || | | ||| | ||| || || ||||||| || Sbjct 27315 GTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGG 27374 Query 154307 -AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 ||| | || ||||| || | || || ||||| || || ||||| || Sbjct 27375 TGATG-GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACA 27433 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 | | ||| || |||||||| | ||||| ||||||||||||||||| | || || | Sbjct 27434 TGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACAC 27493 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCAT 154485 ||||||||||||| || || || |||||||| | || || | ||||||| | Sbjct 27494 GCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAAC 27553 Query 154486 TTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 |||||| || ||| |||| || ||| ||| Sbjct 27554 GTTCGAGTGTCTTGAAACCAAAGAACTGGTA 27584 >seq5 Length=1540376 Score = 145 bits (160), Expect = 8e-30 Identities = 504/764 (66%), Gaps = 27/764 (4%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||||||| || ||| ||||| | || |||||||| ||| ||||| || Sbjct 776157 AACGATGACGAGCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGC 776098 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGC---AGCGGAACGTTCCGGAACTCGAGGCG 52202 || || ||| ||||| | ||| || | |||| | || | | |||||| Sbjct 776097 ATTGTCAACGAGAACCTTGTTGAGCG-ATTCTCTAGCGAA--GTACAAATCCCCGAGGCA 776041 Query 52203 CAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTG 52262 | || ||| || ||| ||| | | || ||| ||| ||| | |||| ||| |||| Sbjct 776040 CGATGCTTCTACGGTTTCCAAATCATGATGGAGAACGTTCACTCAGAGACCTACTCTCTG 775981 Query 52263 CTCATTGAGCAGCTGATAAAAGATGAGCACGAGC-GCGACACG---CTGCTGAATGCGTT 52318 ||||| || || | | | || |||| | ||| ||| || | || | || || | Sbjct 775980 CTCATCGA-CACAT-ACATCAGC-GAGCCCAAGCAGCG-CAGGTACCTCTTCAACGCCAT 775925 Query 52319 CGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGA 52378 ||| || | || ||| | ||||| ||||| | ||||| || |||||| | | Sbjct 775924 CGACAACATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAA 775865 Query 52379 CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC 52438 | | |||| | ||| | ||| | || || |||||| || ||||| | || || Sbjct 775864 GAACTCCACATTCGCCAACCGCCTTGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAG 775805 Query 52439 CGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTT 52498 ||| || ||| ||||||| | | || | | || | |||||||| || || || Sbjct 775804 CGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATT 775745 Query 52499 CAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTA 52558 | ||||||| | || || || ||||| || ||||||| ||||| || ||||| || Sbjct 775744 CTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTT 775685 Query 52559 CAAGACGCGCGT-GACCGAAAAATTGGATTCG-GACACGATCCTGAGC-ATGTTCAAGGA 52615 | | | | | || ||| || | | || | || |||| || ||| || Sbjct 775684 CT---CTCTCCTCGA--GAACAAGCCCAGCCCAGAGTCTGTCA-GAGCTATCATCACTGA 775631 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 || || | || || ||||||| || | | ||| || || || ||||| ||||| Sbjct 775630 AGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCAT 775571 Query 52676 GAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 |||||| | || ||||||| | ||||||||||| || || || |||||| || || | Sbjct 775570 GAACGCT-ACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCC 775512 Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793 |||| | | ||| || || | |||| ||| || || || || ||| | |||||||| Sbjct 775511 TCGGCAACGTCAAGGT-CTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCT 775453 Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | || ||||||||||| ||||||||||| |||||||| || Sbjct 775452 CTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 775409 >seq10 Length=1117896 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | ||||||||||| ||||||||||| Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| || | || || |||| |||| |||||||||||||||||||| Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | ||| || | |||||| | || |||| Sbjct 915170 ATACCCTCCTTGTC-CTGAATCTTCGACTTGACGTTG-TCAATAGTGTCGCTTGATTCCA 915113 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | || || |||||||| || || || || || ||||| Sbjct 915112 CCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | |||||||| || ||||||||||| Sbjct 915518 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 915459 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || ||||| | |||| |||||||| ||||||||||| Sbjct 915458 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 915399 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || |||| |||| || | |||||| | ||||| || Sbjct 915398 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG-TCGATCGTGTCGCTGGACTCGAC 915340 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || ||||| || || || |||||||| Sbjct 915339 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || || || |||||||||||| || |||| Sbjct 915029 GACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCG 914970 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || || || |||||||| || || || ||||| ||| ||| || | Sbjct 914969 AAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACG 914910 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 | || | |||||||| ||||| ||||| | || | || || || |||| Sbjct 914909 TTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 914858 >seq13 Length=1001457 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | |||||||||| || |||||||||||| | Sbjct 407190 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 407249 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||| || |||| |||| || |||||||||||||| || Sbjct 407250 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 407309 Query 138508 ATACCTTCTTTGTC 138521 || || || ||||| Sbjct 407310 ATGCCCTCCTTGTC 407323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261909940880