Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq5 120 3e-22
seq10 100 3e-16
seq16 91.5 1e-13
seq13 82.4 7e-11
>seq5
Length=1540376
Score = 120 bits (132), Expect = 3e-22
Identities = 250/368 (68%), Gaps = 27/368 (7%)
Strand=Plus/Minus
Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282
|||||||| || || || ||||||||| ||||| | ||||| ||| |||||||| ||
Sbjct 775761 ATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGAC 775702
Query 47283 TTTGCCTG---TCTCTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCA----C 47335
|| ||||| ||||| || | || ||| | ||| | | ||||| |
Sbjct 775701 TTCGCCTGCCTTCTCTTCTCTCTC-CTCGAG---AACAA------GCCCAGCCCAGAGTC 775652
Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395
||||| | || | | |||||||||| |||||| |||||| || ||| || ||
Sbjct 775651 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 775592
Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455
|| || | | || |||||||| | ||| | | |||||||| || |||||
Sbjct 775591 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 775532
Query 47456 CGACCGCCTGCTCGT-----TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCA 47510
||||| ||||| | || || || || |||| | |||||| || || ||
Sbjct 775531 TGACCGTCTGCTGTTGGCCCTCGGC-AACGT----CAAGGTCTACCACGCCACCAACCCC 775477
Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570
||||| || ||| | |||||||| || | || ||||||||||| |||||||||||||||
Sbjct 775476 TTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTC 775417
Query 47571 GGCGAATA 47578
||||| ||
Sbjct 775416 GGCGACTA 775409
>seq10
Length=1117896
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||| || || | || | |||||| || | |||||||| || || || ||||| ||
Sbjct 915519 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 915460
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||| || || || ||||| || |||||| |||| | |||||||| || |||||
Sbjct 915459 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 915400
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||| | | |||| ||||| | ||||||
Sbjct 915399 AATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGAC 915340
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || || ||||| ||||| || || || ||||||||
Sbjct 915339 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || || || || ||||| ||| || |||||| ||| || ||||| || ||
Sbjct 914751 GTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCG 914692
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 914691 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 914632
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| | |||| ||||| | ||| || |||| ||| | || || |||||
Sbjct 914631 ACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 914579
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/176 (72%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| || ||||| || || || || |||||
Sbjct 915032 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 914973
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | || |||||||| ||||| |||||||||||||| ||| || ||||
Sbjct 914972 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 914913
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| |||| |||| |||||| | ||| || || | || | || ||||||||||
Sbjct 914912 ACGTTG-TCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 914858
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||||||| | |||||||| ||||| || ||||| ||
Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || | ||| ||||| ||| |||| | ||||| || || |||||
Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || ||| ||||| |||| || | ||||| | || ||
Sbjct 915170 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCAATAGTGTCGCTTGATTCCAC 915112
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | || ||||| ||||| || || || || || |||||
Sbjct 915111 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
>seq16
Length=840418
Score = 91.5 bits (100), Expect = 1e-13
Identities = 199/290 (69%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 147273 GTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGGAAACACGAACACATTTGGG 147331
||| ||||||||||||||||| ||||| ||| | || ||||| || || ||||||| |
Sbjct 27315 GTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATG-AGGAAGCATGACGACATTTGTG 27373
Query 147332 GACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCA-GACTC 147390
| |||||||| |||| ||| || |||||| ||||| || | || |
Sbjct 27374 GTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGAC 27432
Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450
|| | | || || || ||||| || | |||||||||||||||| | | || ||
Sbjct 27433 ATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACA 27492
Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCA 147510
|||||||||||||| || || || || || | | | | || | | |||||| |
Sbjct 27493 CGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATAT-GA 27551
Query 147511 TTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559
| || || || |||||||||||| ||| ||||| | |||| | || ||
Sbjct 27552 ACGTTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGT 27601
>seq13
Length=1001457
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/157 (72%), Gaps = 1/157 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 407190 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 407249
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || ||||| ||| |||||| ||||| || || || ||
Sbjct 407250 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 407309
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGT 127042
||||||||||||||| ||| || ||||| |||||
Sbjct 407310 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 407346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500330442960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |