Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq16 111 1e-19
>seq16
Length=840418
Score = 111 bits (122), Expect = 1e-19
Identities = 291/441 (66%), Gaps = 5/441 (1%)
Strand=Plus/Minus
Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957
||||||||||| || ||||| ||||||||||| || ||| | ||| | |||||
Sbjct 27527 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGAT 27468
Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017
|||||||| || || | ||| || ||||| | ||||||||||| | ||||| |||||
Sbjct 27467 GACATCGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 27408
Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077
|| || |||||| ||| ||||| | || || |||| || || || | ||
Sbjct 27407 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATC 27348
Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGAT 123136
| || || ||||||||| ||| || || || || | | || || ||||||||
Sbjct 27347 GACATGAAGGAGGACAGCATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGAT 27289
Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196
||||| | ||||| || ||| | ||||||||| | | | | ||
Sbjct 27288 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 27229
Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256
|||| | |||| |||||| | || ||| ||||||| || || ||||| ||
Sbjct 27228 CATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAA 27169
Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCT 123313
| | | || | ||||||||||| || ||| || ||| || | || ||||| ||
Sbjct 27168 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCT 27109
Query 123314 AGAACCGTGGCACGTTGATGT 123334
|| || ||||||| ||| ||
Sbjct 27108 CGAGCCATGGCACGCTGACGT 27088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452002753646840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |