Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq16 111 1e-19 >seq16 Length=840418 Score = 111 bits (122), Expect = 1e-19 Identities = 291/441 (66%), Gaps = 5/441 (1%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||||||||| || ||||| ||||||||||| || ||| | ||| | ||||| Sbjct 27527 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGAT 27468 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| || || | ||| || ||||| | ||||||||||| | ||||| ||||| Sbjct 27467 GACATCGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 27408 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || || |||||| ||| ||||| | || || |||| || || || | || Sbjct 27407 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATC 27348 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGAT 123136 | || || ||||||||| ||| || || || || | | || || |||||||| Sbjct 27347 GACATGAAGGAGGACAGCATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGAT 27289 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 ||||| | ||||| || ||| | ||||||||| | | | | || Sbjct 27288 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 27229 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 |||| | |||| |||||| | || ||| ||||||| || || ||||| || Sbjct 27228 CATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAA 27169 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCT 123313 | | | || | ||||||||||| || ||| || ||| || | || ||||| || Sbjct 27168 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCT 27109 Query 123314 AGAACCGTGGCACGTTGATGT 123334 || || ||||||| ||| || Sbjct 27108 CGAGCCATGGCACGCTGACGT 27088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002753646840