Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq16 232 8e-56
seq5 91.5 2e-13
>seq16
Length=840418
Score = 232 bits (256), Expect = 8e-56
Identities = 1109/1743 (64%), Gaps = 41/1743 (2%)
Strand=Plus/Plus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
||||| |||||||| || |||||||| || ||||||| || | ||||| || |
Sbjct 25789 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 25848
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677
| |||| | || || | |||| || ||| | || || || || |||||
Sbjct 25849 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 25908
Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTTC 115735
|| || || || ||||| ||||| | |||||| | ||| ||||| || ||
Sbjct 25909 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 25966
Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATAGAGCCACCTGC 115793
|||| ||| |||| | || || ||||| | || || ||| || || |||| |
Sbjct 25967 TGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATCGA---ACCTCC 26021
Query 115794 CTTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT- 115849
| | | |||| | | |||||| | || ||||| ||||| || | || ||||
Sbjct 26022 ATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTT 26081
Query 115850 ---CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGA 115906
| || | | | |||||||| |||||||| |||||| || | |||||
Sbjct 26082 GAGCAACCATGGG----TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGA 26137
Query 115907 TGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTG 115966
|||||| ||||||||||| |||||||| ||||| |||| || || | |||||||| |
Sbjct 26138 TGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAG 26197
Query 115967 TGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGA 116026
| ||||||||||| ||||| || |||||| | ||| | | ||| ||||| |
Sbjct 26198 TTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCA 26257
Query 116027 GGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGAT 116084
| | |||||| | || | || | || | | | ||||||||| ||||||||||
Sbjct 26258 GAGACGCCCAGTCCCAGAGGTCAG-TAGGTGT-GACATTCCACATATCGTACTGGAGGAT 26315
Query 116085 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 116144
||| ||||| | || ||||| || | |||| || || || ||| || | ||
Sbjct 26316 ACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTC 26375
Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204
| | | ||| || || || || || ||||| || || | || | |||
Sbjct 26376 GCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTT 26435
Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264
|| ||||| || || || | || ||| | || |||| || |||||||| ||
Sbjct 26436 AGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAAC 26495
Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAA 116324
||| | || || || || || | | || || || || || || ||
Sbjct 26496 ACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTG 26555
Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384
|| ||||| | | | || | || |||||| |||| ||||| ||| || |||||
Sbjct 26556 GTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTT 26615
Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444
| | | ||||| || | || | | |||| | ||| ||||| | || ||||
Sbjct 26616 CTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAA 26675
Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504
|| || |||| | |||||| | | |||||||| | ||| || || |||| || ||
Sbjct 26676 GTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGA 26735
Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564
|| ||||| || | |||||| || || ||| ||| || || |||||||||||
Sbjct 26736 GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAG 26795
Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC 116624
|||| | || | || ||||| || || | || || || || | ||| | | ||
Sbjct 26796 CATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGC 26855
Query 116625 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTC 116684
| ||||| || | || || |||||| | ||| || || || || ||
Sbjct 26856 GCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTC 26915
Query 116685 TTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACC 116744
|||||| | || | ||| || || || | || || | || | ||| | ||
Sbjct 26916 TTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCC 26975
Query 116745 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804
|| | ||| ||||||||||||||||| || ||||| || || |||||||||| ||
Sbjct 26976 GTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCG 27035
Query 116805 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864
| ||| | || || | || || || |||| || | ||| | | || || ||
Sbjct 27036 AGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGC 27095
Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTT 116918
|||||| || || ||||| | |||| | | ||| |||| ||| ||||||
Sbjct 27096 GTGCCATGGCTCGAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACCCTGGTC 27152
Query 116919 TACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCC 116978
||||| | || || ||| |||| || ||||| ||||||| ||||| |||| ||
Sbjct 27153 GACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCC 27212
Query 116979 ATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATA 117036
|| || || |||| || ||| | | || | | ||| | || | ||||||
Sbjct 27213 GTTAGTGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATA 27270
Query 117037 CCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 117096
|| || || ||| ||||| || || | |||| || |||| || || |||||
Sbjct 27271 CCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATG 27330
Query 117097 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCG 117156
||| |||| | ||||||||||||| |||||||||||| |||||| || |||
Sbjct 27331 CTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCG 27390
Query 117157 TTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTC 117215
||||| | || || | ||||| |||| ||| ||| ||||| | |||||||||||
Sbjct 27391 TTGAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTC 27449
Query 117216 CAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTG 117275
| | | ||||| || |||||||| || | | || ||||| | ||||| |||
Sbjct 27450 GATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 27509
Query 117276 GGG 117278
||
Sbjct 27510 TGG 27512
>seq5
Length=1540376
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|||||||||||||||||||| || || ||||| ||||| ||||| ||||| ||||||
Sbjct 775715 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 775774
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | |||||| || | || || || ||||||||| ||||| ||| |||||
Sbjct 775775 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 775834
Query 127658 GCAAATAGACGCTCGGCAAA 127677
|||| || || | ||| ||
Sbjct 775835 GCAACAAGGCGGTTGGCGAA 775854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506594161640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |