Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq16 232 8e-56 seq5 91.5 2e-13 >seq16 Length=840418 Score = 232 bits (256), Expect = 8e-56 Identities = 1109/1743 (64%), Gaps = 41/1743 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || |||||||| || ||||||| || | ||||| || | Sbjct 25789 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 25848 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | || || | |||| || ||| | || || || || ||||| Sbjct 25849 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 25908 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTTC 115735 || || || || ||||| ||||| | |||||| | ||| ||||| || || Sbjct 25909 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 25966 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATAGAGCCACCTGC 115793 |||| ||| |||| | || || ||||| | || || ||| || || |||| | Sbjct 25967 TGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATCGA---ACCTCC 26021 Query 115794 CTTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT- 115849 | | | |||| | | |||||| | || ||||| ||||| || | || |||| Sbjct 26022 ATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTT 26081 Query 115850 ---CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGA 115906 | || | | | |||||||| |||||||| |||||| || | ||||| Sbjct 26082 GAGCAACCATGGG----TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGA 26137 Query 115907 TGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTG 115966 |||||| ||||||||||| |||||||| ||||| |||| || || | |||||||| | Sbjct 26138 TGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAG 26197 Query 115967 TGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGA 116026 | ||||||||||| ||||| || |||||| | ||| | | ||| ||||| | Sbjct 26198 TTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCA 26257 Query 116027 GGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGAT 116084 | | |||||| | || | || | || | | | ||||||||| |||||||||| Sbjct 26258 GAGACGCCCAGTCCCAGAGGTCAG-TAGGTGT-GACATTCCACATATCGTACTGGAGGAT 26315 Query 116085 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 116144 ||| ||||| | || ||||| || | |||| || || || ||| || | || Sbjct 26316 ACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTC 26375 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 | | | ||| || || || || || ||||| || || | || | ||| Sbjct 26376 GCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTT 26435 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264 || ||||| || || || | || ||| | || |||| || |||||||| || Sbjct 26436 AGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAAC 26495 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAA 116324 ||| | || || || || || | | || || || || || || || Sbjct 26496 ACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTG 26555 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384 || ||||| | | | || | || |||||| |||| ||||| ||| || ||||| Sbjct 26556 GTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTT 26615 Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444 | | | ||||| || | || | | |||| | ||| ||||| | || |||| Sbjct 26616 CTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAA 26675 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 || || |||| | |||||| | | |||||||| | ||| || || |||| || || Sbjct 26676 GTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGA 26735 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 || ||||| || | |||||| || || ||| ||| || || ||||||||||| Sbjct 26736 GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAG 26795 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC 116624 |||| | || | || ||||| || || | || || || || | ||| | | || Sbjct 26796 CATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGC 26855 Query 116625 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTC 116684 | ||||| || | || || |||||| | ||| || || || || || Sbjct 26856 GCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTC 26915 Query 116685 TTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACC 116744 |||||| | || | ||| || || || | || || | || | ||| | || Sbjct 26916 TTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCC 26975 Query 116745 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 || | ||| ||||||||||||||||| || ||||| || || |||||||||| || Sbjct 26976 GTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCG 27035 Query 116805 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 | ||| | || || | || || || |||| || | ||| | | || || || Sbjct 27036 AGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGC 27095 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTT 116918 |||||| || || ||||| | |||| | | ||| |||| ||| |||||| Sbjct 27096 GTGCCATGGCTCGAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACCCTGGTC 27152 Query 116919 TACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCC 116978 ||||| | || || ||| |||| || ||||| ||||||| ||||| |||| || Sbjct 27153 GACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCC 27212 Query 116979 ATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATA 117036 || || || |||| || ||| | | || | | ||| | || | |||||| Sbjct 27213 GTTAGTGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATA 27270 Query 117037 CCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 117096 || || || ||| ||||| || || | |||| || |||| || || ||||| Sbjct 27271 CCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATG 27330 Query 117097 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCG 117156 ||| |||| | ||||||||||||| |||||||||||| |||||| || ||| Sbjct 27331 CTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCG 27390 Query 117157 TTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTC 117215 ||||| | || || | ||||| |||| ||| ||| ||||| | ||||||||||| Sbjct 27391 TTGAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTC 27449 Query 117216 CAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTG 117275 | | | ||||| || |||||||| || | | || ||||| | ||||| ||| Sbjct 27450 GATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 27509 Query 117276 GGG 117278 || Sbjct 27510 TGG 27512 >seq5 Length=1540376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||||||||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 775715 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 775774 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || || ||||||||| ||||| ||| ||||| Sbjct 775775 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 775834 Query 127658 GCAAATAGACGCTCGGCAAA 127677 |||| || || | ||| || Sbjct 775835 GCAACAAGGCGGTTGGCGAA 775854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506594161640