Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq16 125 1e-23
>seq16
Length=840418
Score = 125 bits (138), Expect = 1e-23
Identities = 330/497 (66%), Gaps = 9/497 (2%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896
||||| || || ||||| ||||||| | ||||| | || | | ||||||||||||
Sbjct 25744 TCTTGGTCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATG 25803
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|| ||||| || || || ||| || | |||||| |||| | |||| || |
Sbjct 25804 CCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTGATCTTGCCCATAGTA 25863
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016
|| || |||||| ||||| || ||||| ||||| ||||||| | || || |||
Sbjct 25864 GGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCG 25923
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG-AACACGTCTCTGGT 204075
||||| | || || | |||||| |||||||| || |||||| || |||| | ||
Sbjct 25924 GCCATCTCAATGATCCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCT-TTGT 25982
Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG---ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132
| | ||| || || | ||||| ||||| || ||||| || | | |
Sbjct 25983 CTCCTCAGG--GATGTTGGGA-ATCCTGGCAATCGAACCTCCATCGGCGATGATACGGTT 26039
Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192
| || | | ||| ||||| |||| || || ||| | || |||||||
Sbjct 26040 CTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGAC 26099
Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252
| ||| || || || | || || | |||| | | |||| |||| |||| |||||
Sbjct 26100 AACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAA 26159
Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312
|||||||||||| | |||||| | ||| ||| || |||||||| || | ||||||
Sbjct 26160 GCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAG 26219
Query 204313 GGAGTTGCGCACACCGT 204329
|||||||| |||||||
Sbjct 26220 CGAGTTGCGTACACCGT 26236
Score = 87.8 bits (96), Expect = 3e-12
Identities = 403/627 (64%), Gaps = 12/627 (2%)
Strand=Plus/Plus
Query 205072 GTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACA 205131
|||||| || | || || |||||| || || || || || || | || || ||
Sbjct 26898 GTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCA 26957
Query 205132 CATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG 205191
|||||| | ||| | | ||||| || | || ||| || ||||| ||||||||
Sbjct 26958 CATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAG 27017
Query 205192 GCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAG 205251
|||| || ||||| || || | | | || | || ||||||| || ||| ||
Sbjct 27018 AGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAG 27077
Query 205252 CCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCT 205310
||||| | | ||| |||||||| ||||| | | | ||| | || ||||| | ||
Sbjct 27078 G-AAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCT 27136
Query 205311 TGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCA 205370
|||| ||||||||||| || ||||| | |||| | || || ||||| || | |
Sbjct 27137 TGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGA 27196
Query 205371 GACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCA--CGTTGGA 205428
|||| || | || ||||| |||| |||| ||||| ||| | | || || |
Sbjct 27197 GACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCA 27256
Query 205429 GATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-CTCTTGCAGAGTGC 205487
| | |||||| ||||||| ||||| |||| || || ||||| || |||
Sbjct 27257 CGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG-AGTGTGT 27313
Query 205488 TGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCACGAAGCCAGCT-T 205545
||| ||||| ||||| || ||| || |||| | || |||| || | || | |
Sbjct 27314 CGTAAATGCCGTCGATGCTGTCCTCCTTCA-TGTCGATGAGGAAGCATGACGACATTTGT 27372
Query 205546 GGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCT 205605
|| | | | |||||||||| ||| | ||| || |||||| ||||| ||| |
Sbjct 27373 GGTGATGGT-GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGA 27431
Query 205606 CAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGAT 205665
|| | ||||||||| | | |||| | || ||||||||| || | || |
Sbjct 27432 CATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAAC 27491
Query 205666 CCTCATGAAGAGGTGTTGAGGTCTCTC 205692
| ||||| | |||||| || | |||
Sbjct 27492 ACGCATGAGCATGTGTTGTGGGCGCTC 27518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154414784240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |