Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq10 145 2e-29
seq14 113 1e-19
seq13 105 2e-17
>seq10
Length=1117896
Score = 145 bits (160), Expect = 2e-29
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| || || ||||||||||||| ||||||||| | | ||| | || ||||||| ||||
Sbjct 915266 TGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCCAACTGC 915207
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
||||||||||||||||||||||| ||||||||| ||| || || |||||||||||
Sbjct 915206 TTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTC 915147
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| ||| || | ||||| ||| ||| || || | |||||| ||||| || ||
Sbjct 915146 GACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGTC 915087
Query 199607 AGAGTTTTCACAAAAATTTG 199626
|| || || || || |||||
Sbjct 915086 AGGGTCTTGACGAAGATTTG 915067
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||||||||| |||||||| |||| ||||||||| | | ||
Sbjct 915512 CGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTT 915453
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || |||||||||||||| || ||||||||||||||||||||||||||| ||| ||
Sbjct 915452 CGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCC 915393
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| ||||| | | || || |||||
Sbjct 915392 TCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAAT 915333
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || ||||| || || || || ||
Sbjct 915332 GTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTG 915295
Score = 105 bits (116), Expect = 2e-17
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||||||||| | || |||||||| || | ||||||||| | || || | || ||
Sbjct 915047 AGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 914988
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||||||||||||||| || || ||||| |||||| || || || ||
Sbjct 914987 TCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCT 914928
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| |||||| ||| ||| |||| |||||| | || || || || | ||||| |||
Sbjct 914927 TGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTC 914868
Query 199598 TTACCCGT 199605
|| || ||
Sbjct 914867 TTGCCGGT 914860
Score = 102 bits (112), Expect = 2e-16
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| || || || || || ||||| |||| ||||||||| | ||| ||
Sbjct 914775 CGAAGGCGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTG 914716
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| ||||||||||| | ||||||||||| || ||| ||
Sbjct 914715 CGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCC 914656
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| ||||| | | || || || |
Sbjct 914655 TCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGG 914596
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 914595 GTGATGGTCTTTCCGGTGA 914577
>seq14
Length=985265
Score = 113 bits (124), Expect = 1e-19
Identities = 91/110 (83%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| | |||||| || |||||||| |||| ||||||||| | | |||
Sbjct 862986 CGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 862927
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| ||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 862926 CGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGG 862877
>seq13
Length=1001457
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | |||||| || |||||||| |||| ||||||||| | || ||| | |||||
Sbjct 407205 AGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 407264
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||||||||||||||| || ||||| |||||||| ||| || || |||
Sbjct 407265 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 407324
Query 199538 TGAATCTT 199545
|| |||||
Sbjct 407325 TGGATCTT 407332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178920406710293
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |