Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq10 159 4e-34
seq13 105 8e-18
seq14 98.7 1e-15
>seq10
Length=1117896
Score = 159 bits (176), Expect = 4e-34
Identities = 167/217 (77%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| ||| | |||| |||||||||||| |||||||| || ||||| || |
Sbjct 915279 ACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCC 915220
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || | |||||| |||||||| || | ||||| ||||| | || | | ||||||
Sbjct 915219 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 915160
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| |||||| ||||| ||| | || |||||||| |||||||| || | |||||
Sbjct 915159 GTCCTGAATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGA 915101
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| ||||| || || || |||||||||||
Sbjct 915100 TGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 122 bits (134), Expect = 1e-22
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| ||| ||||| ||||| ||||||||||| | ||||| | || ||
Sbjct 914763 ACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCA 914704
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||||||||| ||||||||||||||||| | || | || |||||||||| |
Sbjct 914703 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 914644
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| |||||| | | | |||||| || || || || | |||||||| ||
Sbjct 914643 ATCTTGCTCTTGACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTT 914584
Query 46565 CCCGT 46569
|| ||
Sbjct 914583 CCGGT 914579
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| || | ||| |||||| ||||| |||||||| || || || || |
Sbjct 915507 ACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCC 915448
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || |||||||| || ||||| || | ||||||||||| | || | | ||||||
Sbjct 915447 GTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 915388
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||| | | | | ||||||||| || || || |||| || ||
Sbjct 915387 GTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAAT 915328
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || || || || ||||| |||||
Sbjct 915327 GGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Score = 111 bits (122), Expect = 2e-19
Identities = 139/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| || |||||||| |||||| || || ||||||||||| || ||||| |||| |||
Sbjct 915044 ACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 914985
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| |||||||| || | ||| ||||| || | || | || ||||||||| |
Sbjct 914984 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 914925
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||||| ||| | | | |||||| || || || || | |||||||| ||
Sbjct 914924 ATCTTTGACTTGA-CGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTT 914866
Query 46564 GCCCGTCA 46571
||| ||||
Sbjct 914865 GCCGGTCA 914858
>seq13
Length=1001457
Score = 105 bits (116), Expect = 8e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| | || ||||| ||||| ||||||||
Sbjct 407225 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAA 407284
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| |||||| ||||| | || | || |||||||||| |||||| |||||
Sbjct 407285 GATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 407340
>seq14
Length=985265
Score = 98.7 bits (108), Expect = 1e-15
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || |||||||| | || ||||||||||| ||||||||
Sbjct 862957 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 862898
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|||| ||||||||||| | || | || |||||||||
Sbjct 862897 GATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 862859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237841827080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |