Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq10 159 4e-34 seq13 105 8e-18 seq14 98.7 1e-15 >seq10 Length=1117896 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||| | |||| |||||||||||| |||||||| || ||||| || | Sbjct 915279 ACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCC 915220 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | |||||| |||||||| || | ||||| ||||| | || | | |||||| Sbjct 915219 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 915160 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | || |||||||| |||||||| || | ||||| Sbjct 915159 GTCCTGAATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGA 915101 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || || || ||||||||||| Sbjct 915100 TGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| ||||| ||||| ||||||||||| | ||||| | || || Sbjct 914763 ACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCA 914704 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| ||||||||||||||||| | || | || |||||||||| | Sbjct 914703 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 914644 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||||| | | | |||||| || || || || | |||||||| || Sbjct 914643 ATCTTGCTCTTGACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTT 914584 Query 46565 CCCGT 46569 || || Sbjct 914583 CCGGT 914579 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | ||| |||||| ||||| |||||||| || || || || | Sbjct 915507 ACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCC 915448 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| || | ||||||||||| | || | | |||||| Sbjct 915447 GTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 915388 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | | | | ||||||||| || || || |||| || || Sbjct 915387 GTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAAT 915328 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || || || ||||| ||||| Sbjct 915327 GGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||||||| |||||| || || ||||||||||| || ||||| |||| ||| Sbjct 915044 ACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 914985 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| || | ||| ||||| || | || | || ||||||||| | Sbjct 914984 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 914925 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | |||||| || || || || | |||||||| || Sbjct 914924 ATCTTTGACTTGA-CGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTT 914866 Query 46564 GCCCGTCA 46571 ||| |||| Sbjct 914865 GCCGGTCA 914858 >seq13 Length=1001457 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| | || ||||| ||||| |||||||| Sbjct 407225 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAA 407284 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||| ||||| | || | || |||||||||| |||||| ||||| Sbjct 407285 GATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 407340 >seq14 Length=985265 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || ||||||||||| |||||||| Sbjct 862957 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 862898 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| ||||||||||| | || | || ||||||||| Sbjct 862897 GATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 862859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237841827080