Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 334 8e-87 seq10 127 2e-24 seq13 89.7 5e-13 >seq5 Length=1540376 Score = 334 bits (370), Expect = 8e-87 Identities = 596/859 (69%), Gaps = 17/859 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || ||||| || ||||| || || || || || || | Sbjct 775390 CATGACACCAGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGC 775449 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 || |||||| | ||| || || |||||||||| | || |||| |||| |||| Sbjct 775450 CAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCC 775509 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || | || ||||| | ||| || ||||||||||||||||| ||||| | | || Sbjct 775510 GAG--GGCCAAC-AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGC 775566 Query 132767 AATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | | | || |||||| |||| || || || ||| | | || ||||| || || Sbjct 775567 GTTCATG-CCGAGCAGAGCGCAT-GGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCG 775624 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 || || || |||| ||| | || || | | | ||| ||| | | | | | | Sbjct 775625 ACGGCTTCAGTGATGATAGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAG 775684 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 || | | ||| || |||||| |||| ||||||||| | ||| ||||| |||||| | Sbjct 775685 AAGAGAAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 775744 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | |||||||| || ||||| || |||||||| || |||| ||||||| || Sbjct 775745 AATGTTAGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCG 775804 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 ||||||| ||||| || || ||||| || || ||||| | | |||| |||| | Sbjct 775805 CTGAAGAAGATACCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGAGTTC 775864 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 ||| || |||||| ||||| ||||| |||||||| | || ||| || || | ||| Sbjct 775865 TTGTCGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCG 775924 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGG 133183 |||||||| | | | | | | | || | || ||| | ||| ||||||||||| Sbjct 775925 ATGGCGTTGA--AGAGGTACCTGCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGCA 775982 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 || || | || ||||| ||||||||||| |||||| || ||||| ||||| || | Sbjct 775983 GAGAGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTG 776042 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 ||||| | || ||||| || ||| ||||| || || || |||||||| ||||| | Sbjct 776043 CCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCAT 776102 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 || ||| ||||| ||||| || ||||| |||||| |||||||| ||||| | | Sbjct 776103 CGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGAC 776162 Query 133364 GC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 || | ||||||| | ||||||||| ||||| | |||||| ||||||| || || | Sbjct 776163 GCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAG 776222 Query 133421 CCTCGGCTTTTTTGTACAT 133439 ||||||| || |||||||| Sbjct 776223 CCTCGGCCTTCTTGTACAT 776241 >seq10 Length=1117896 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| |||||||| |||| || || | | | Sbjct 915064 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 915123 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | ||||| ||||| ||||| | ||||| Sbjct 915124 GACACTATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 915182 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| || || ||| |||| |||| || || ||| |||||||| Sbjct 915183 ACAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCAGACTACAA 915242 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||||||||||| ||| Sbjct 915243 CATCCAAAAGGAGTCTACACTTCATTTGGTGCTTCGT 915279 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||| || | || |||||| ||| | Sbjct 915292 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCCAGC 915351 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | ||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 915352 GACA-CGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCA 915410 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || |||||||| |||| || || ||| |||||||| Sbjct 915411 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAA 915470 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || |||||||| ||| | | ||||| Sbjct 915471 CATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGG 915518 Score = 107 bits (118), Expect = 2e-18 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| || || ||||||||| |||| || ||| || |||||| | | || | | || Sbjct 914577 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATG--TCAA 914634 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || |||| ||||| ||||| |||||| | ||||| ||||| | || | ||| || Sbjct 914635 GAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGG 914694 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || || | |||||| | ||||||||||||||| |||||| | || || Sbjct 914695 CAAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAACATCCAGAAGGAATCTACCCT 914754 Query 38444 GCATTTGGTGCTGCG 38458 |||| | || || || Sbjct 914755 GCATCTCGTCCTCCG 914769 >seq13 Length=1001457 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | ||||||||||| || || | ||| || || Sbjct 407332 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGAAAG 407273 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | ||||| || ||||||||||||||| ||||| | || || || Sbjct 407272 CAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACCCTCCAC 407213 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 407212 TTGGTCCTCCGT 407201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172306079360