Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq5 334 8e-87
seq10 127 2e-24
seq13 89.7 5e-13
>seq5
Length=1540376
Score = 334 bits (370), Expect = 8e-87
Identities = 596/859 (69%), Gaps = 17/859 (2%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || ||||| || ||||| || || || || || || |
Sbjct 775390 CATGACACCAGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGC 775449
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707
|| |||||| | ||| || || |||||||||| | || |||| |||| ||||
Sbjct 775450 CAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCC 775509
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766
|| || | || ||||| | ||| || ||||||||||||||||| ||||| | | ||
Sbjct 775510 GAG--GGCCAAC-AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGC 775566
Query 132767 AATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825
| | | || |||||| |||| || || || ||| | | || ||||| || ||
Sbjct 775567 GTTCATG-CCGAGCAGAGCGCAT-GGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCG 775624
Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885
|| || || |||| ||| | || || | | | ||| ||| | | | | | |
Sbjct 775625 ACGGCTTCAGTGATGATAGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAG 775684
Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945
|| | | ||| || |||||| |||| ||||||||| | ||| ||||| |||||| |
Sbjct 775685 AAGAGAAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 775744
Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005
|| || | |||||||| || ||||| || |||||||| || |||| ||||||| ||
Sbjct 775745 AATGTTAGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCG 775804
Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065
||||||| ||||| || || ||||| || || ||||| | | |||| |||| |
Sbjct 775805 CTGAAGAAGATACCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGAGTTC 775864
Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125
||| || |||||| ||||| ||||| |||||||| | || ||| || || | |||
Sbjct 775865 TTGTCGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCG 775924
Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGG 133183
|||||||| | | | | | | | || | || ||| | ||| |||||||||||
Sbjct 775925 ATGGCGTTGA--AGAGGTACCTGCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGCA 775982
Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243
|| || | || ||||| ||||||||||| |||||| || ||||| ||||| || |
Sbjct 775983 GAGAGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTG 776042
Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303
||||| | || ||||| || ||| ||||| || || || |||||||| ||||| |
Sbjct 776043 CCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCAT 776102
Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363
|| ||| ||||| ||||| || ||||| |||||| |||||||| ||||| | |
Sbjct 776103 CGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGAC 776162
Query 133364 GC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420
|| | ||||||| | ||||||||| ||||| | |||||| ||||||| || || |
Sbjct 776163 GCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAG 776222
Query 133421 CCTCGGCTTTTTTGTACAT 133439
||||||| || ||||||||
Sbjct 776223 CCTCGGCCTTCTTGTACAT 776241
>seq10
Length=1117896
Score = 127 bits (140), Expect = 2e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || ||||| |||||||| |||| || || | | |
Sbjct 915064 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 915123
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || || | ||||| ||||| ||||| | |||||
Sbjct 915124 GACACTATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 915182
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| || || ||| |||| |||| || || ||| ||||||||
Sbjct 915183 ACAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCAGACTACAA 915242
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| | || || ||||||||||| |||
Sbjct 915243 CATCCAAAAGGAGTCTACACTTCATTTGGTGCTTCGT 915279
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || || || ||||| || | || |||||| ||| |
Sbjct 915292 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCCAGC 915351
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| || | | ||||| || |||| ||||| ||||| ||||| | |||||
Sbjct 915352 GACA-CGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCA 915410
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| || || |||||||| |||| || || ||| ||||||||
Sbjct 915411 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAA 915470
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || || |||||||| ||| | | |||||
Sbjct 915471 CATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGG 915518
Score = 107 bits (118), Expect = 2e-18
Identities = 143/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| || || ||||||||| |||| || ||| || |||||| | | || | | ||
Sbjct 914577 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATG--TCAA 914634
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || |||| ||||| ||||| |||||| | ||||| ||||| | || | ||| ||
Sbjct 914635 GAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGG 914694
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
||| ||||| || || | |||||| | ||||||||||||||| |||||| | || ||
Sbjct 914695 CAAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAACATCCAGAAGGAATCTACCCT 914754
Query 38444 GCATTTGGTGCTGCG 38458
|||| | || || ||
Sbjct 914755 GCATCTCGTCCTCCG 914769
>seq13
Length=1001457
Score = 89.7 bits (98), Expect = 5e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| | ||||||||||| || || | ||| || ||
Sbjct 407332 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGAAAG 407273
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | ||||| || ||||||||||||||| ||||| | || || ||
Sbjct 407272 CAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACCCTCCAC 407213
Query 38448 TTGGTGCTGCGT 38459
||||| || |||
Sbjct 407212 TTGGTCCTCCGT 407201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172306079360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |