Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq10 345 5e-90
seq8 149 8e-31
seq16 132 6e-26
seq4 118 1e-21
>seq10
Length=1117896
Score = 345 bits (382), Expect = 5e-90
Identities = 686/1011 (68%), Gaps = 5/1011 (0%)
Strand=Plus/Plus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||| || || ||||| | || ||||| ||||| ||||||||||||||
Sbjct 515057 TCACCAGACAGGATAGCAGCCTGGACGGCGGCACCGTAGGCGACAGCCTCATCGGGGTTG 515116
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || | || || | ||| | || | || |||
Sbjct 515117 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 515176
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || |||||||||||||| || || || | || || || |||||||| |
Sbjct 515177 ATACGGGTGGATCCACCGACCAAGACAATCTCGTGGACGGAGGACTTGTCGATCTTAGCA 515236
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| || || ||||| || ||||| ||||| | |||| || || ||
Sbjct 515237 TCGCGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCT 515296
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| ||||| |||||||| ||| || ||||| || | || ||||| | || || ||
Sbjct 515297 TCGAAACGAGCACGGGTGATGCTGGTGTAGAAGTCGATACCCTCGTACAGGGAGTCGATC 515356
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| |||| || || || | || || | || ||||| || | ||| || || |||||
Sbjct 515357 TCGATGGAGGTCTGAGCGGAAGAGGACAGAGTGCGCTTGGCCCTCTCGCAAGCGGTTCGG 515416
Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429
| |||||| || ||||| | ||| || | || ||||| || ||||| || |||||
Sbjct 515417 AGACGACGGAGAGCACGAGCGTTGGAGGTCAAGTCCTTCTTGTGCTTACGCTTGAACTCG 515476
Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489
| | |||||| | ||| | ||||| || |||||||||||||| || || ||
Sbjct 515477 TTGGTGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCG 515536
Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549
|| || | ||||| || |||||||| | || ||| | || | || ||||| || |||
Sbjct 515537 GCAGTGGACTTGACCTCGAAGATACCCTCCTCGATGGTCAAGAGGGAGACATCGAAGGTA 515596
Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609
|||||||||| ||| || || || ||||| || | || | ||||| || ||||||
Sbjct 515597 CCACCACCCAAGTCGAAGATAAGGACGTTGCGCTCACCCTCGGTCTTCTTGTCAAGACCG 515656
Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669
|| ||||| || || || || || || || || ||||| || ||| ||||| |||||
Sbjct 515657 TAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATG 515716
Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729
| ||||| || || || || |||||||| ||||| ||||| || || || || |||
Sbjct 515717 AGACCAGCATCCTTGGTAGCCTGACGTTGCGAGTCGTTGAAGTATGCGGGAACAGTGACG 515776
Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789
|| |||| | || | |||||| || || || || | || |||| ||||| |
Sbjct 515777 ACAGCGTTGTTAACGGTGCCACCGAGGTAGGACTCGGCAGTTTCCCTCATCTTGGTCAAG 515836
Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTC 7848
||||| ||||| ||||| || | | || ||| ||| || || || || || || |
Sbjct 515837 ACCATAGATGAGATCTCCTCGGGTGTGAA-TGTCTTCTCCTCGCCCTTGAACTCGACCTG 515895
Query 7849 AATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908
|| | || || |||| | | ||| ||||| | | | | ||||| ||| |
Sbjct 515896 GATAACTGGCTT-GCCGC--CCTTGTCGATGACCTTGAAGGGGAAGTGCTTCATGTCGGC 515952
Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968
||||||| ||| | ||||| | ||||| || |||||||| || || || |||||
Sbjct 515953 CTGGACCTCAGCGTCGGCGAACTTGCGACCGATGAGGCGCTTTGCGTCGAAGACGGTGTT 516012
Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019
|||||||||||| ||||||||| || | ||| || || ||||| ||
Sbjct 516013 GACGGGGTTCATGGCGACTTGGTTCTTTGCGGAGTCACCAATGAGACGCTC 516063
>seq8
Length=1152135
Score = 149 bits (164), Expect = 8e-31
Identities = 242/348 (70%), Gaps = 3/348 (1%)
Strand=Plus/Plus
Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494
|||||| |||||| | | ||||| || | |||||||||||| || || || || ||
Sbjct 882299 GAAGTGGTCAAGGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGAGTGTCTCCAGCAGT 882358
Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554
|| ||||| |||| ||| || | |||| | | || ||||| || ||||||||
Sbjct 882359 AGCCTTGACGGTGAAGACACCACCCTGGATGTGCAGAAGAGAGACATCGAAAGTACCACC 882418
Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---ATCGAGACCGTA 7611
||| || || | ||||| |||||| | || | ||| || | ||||||||||
Sbjct 882419 ACCAAGATCGTAGATGAGGACGTTCCTCTCCTTGTCAGACTTTCCGGAACCGAGACCGTA 882478
Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671
|||||||| || || || || || || || ||||| ||| ||| ||||||||||| |
Sbjct 882479 GGCGATAGCGGCGGCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGC 882538
Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
| || || || || ||||| || || ||||| |||||||| ||||| || | |||
Sbjct 882539 ACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGAC 882598
Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779
|| | | ||| ||||| ||||| | | || |||| || |||||
Sbjct 882599 GGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCGACCTCCTTCAT 882646
>seq16
Length=840418
Score = 132 bits (146), Expect = 6e-26
Identities = 401/614 (65%), Gaps = 9/614 (1%)
Strand=Plus/Plus
Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCC 105522
||||| ||||||| ||| |||| || |||| |||||| || || | || || |
Sbjct 26887 TCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCAC 26946
Query 105523 TGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCT 105582
| | || || | || || ||| || || | | || ||| || |||||||| | ||
Sbjct 26947 TCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCA 27006
Query 105583 GGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAA 105642
|||||||||| || | ||||| || ||| | |||| || | || || |||
Sbjct 27007 GGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTG 27066
Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702
|| | || || || | | | || ||||||||||| || | |||| || | |
Sbjct 27067 CGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCA 27126
Query 105703 CCTTTACGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAA 105758
||| ||| ||| | || | | |||||| | || || ||| || || || |
Sbjct 27127 CCTGGACGCTTGTTGCCACCCTGG-TCGACATAGCGAGCAGTGTTGTTGTATACACGGAG 27185
Query 105759 CATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACG 105818
||| ||||| | ||||| |||||||| || || |||| || | ||| | | |||||
Sbjct 27186 CATGGGAATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACG 27245
Query 105819 TACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTT 105878
| ||| |||| | |||||||| ||||| ||| ||| |||||| ||
Sbjct 27246 AATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTT 27305
Query 105879 TACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGA 105938
| ||| |||||||| |||||||| || || ||||| | | || ||||| || || ||
Sbjct 27306 GAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGA 27365
Query 105939 CATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACC 105998
|||||||||| ||||| || || ||||||| || || | || || |||| | |
Sbjct 27366 CATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA--C 27423
Query 105999 TTTCGATA-ACG-CTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCA 106056
||| || | | | ||||| || || | | | | || || || | || ||||| |||
Sbjct 27424 TTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCA 27483
Query 106057 ATAGCGACGCGCAT 106070
| ||| || |||||
Sbjct 27484 ACAGCAACACGCAT 27497
>seq4
Length=1543048
Score = 118 bits (130), Expect = 1e-21
Identities = 224/328 (68%), Gaps = 10/328 (3%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||| | ||| || || || ||| | ||||| || |||| |||
Sbjct 865705 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTAGACTTGACCTCGAAGACACCA 865764
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| | ||| | | | || | ||| || ||||||||||||| || | | ||||
Sbjct 865765 GCCTGAATCTCGAGAATGGAGATATCGAAAGTACCACCACCCAAATCGTAGACAGCTACG 865824
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
||| ||| || ||| || |||||||| |||| ||| || || || |||||
Sbjct 865825 ------ACGTTGTCGGTGGCCTTGTCAAGACCGTAGGCGAGAGCGGCAGCGGTGGGTTCG 865878
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGTC 7694
|| | | ||| ||| ||| || ||||| || ||| | || || || || ||||| |
Sbjct 865879 TTGACGACACGGAGAACGTTGAGACCAGCGAT--TTGACCAGCGTCCTTGGTAGCTTGAC 865936
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
| || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || |
Sbjct 865937 GCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGTTCTTGCCCA 865996
Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782
|| || || || | || ||||| ||
Sbjct 865997 TGTATGACTCGGCAGTCTCCTTCATCTT 866024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132172806360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |