Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10 345 5e-90 seq8 149 8e-31 seq16 132 6e-26 seq4 118 1e-21 >seq10 Length=1117896 Score = 345 bits (382), Expect = 5e-90 Identities = 686/1011 (68%), Gaps = 5/1011 (0%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| || || ||||| | || ||||| ||||| |||||||||||||| Sbjct 515057 TCACCAGACAGGATAGCAGCCTGGACGGCGGCACCGTAGGCGACAGCCTCATCGGGGTTG 515116 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || | || ||| Sbjct 515117 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 515176 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || |||||||||||||| || || || | || || || |||||||| | Sbjct 515177 ATACGGGTGGATCCACCGACCAAGACAATCTCGTGGACGGAGGACTTGTCGATCTTAGCA 515236 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || ||||| || ||||| ||||| | |||| || || || Sbjct 515237 TCGCGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCT 515296 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| ||| || ||||| || | || ||||| | || || || Sbjct 515297 TCGAAACGAGCACGGGTGATGCTGGTGTAGAAGTCGATACCCTCGTACAGGGAGTCGATC 515356 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || || | || ||||| || | ||| || || ||||| Sbjct 515357 TCGATGGAGGTCTGAGCGGAAGAGGACAGAGTGCGCTTGGCCCTCTCGCAAGCGGTTCGG 515416 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | |||||| || ||||| | ||| || | || ||||| || ||||| || ||||| Sbjct 515417 AGACGACGGAGAGCACGAGCGTTGGAGGTCAAGTCCTTCTTGTGCTTACGCTTGAACTCG 515476 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | | |||||| | ||| | ||||| || |||||||||||||| || || || Sbjct 515477 TTGGTGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCG 515536 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 || || | ||||| || |||||||| | || ||| | || | || ||||| || ||| Sbjct 515537 GCAGTGGACTTGACCTCGAAGATACCCTCCTCGATGGTCAAGAGGGAGACATCGAAGGTA 515596 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||||| ||| || || || ||||| || | || | ||||| || |||||| Sbjct 515597 CCACCACCCAAGTCGAAGATAAGGACGTTGCGCTCACCCTCGGTCTTCTTGTCAAGACCG 515656 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || ||||| || || || || || || || || ||||| || ||| ||||| ||||| Sbjct 515657 TAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATG 515716 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | ||||| || || || || |||||||| ||||| ||||| || || || || ||| Sbjct 515717 AGACCAGCATCCTTGGTAGCCTGACGTTGCGAGTCGTTGAAGTATGCGGGAACAGTGACG 515776 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| | || | |||||| || || || || | || |||| ||||| | Sbjct 515777 ACAGCGTTGTTAACGGTGCCACCGAGGTAGGACTCGGCAGTTTCCCTCATCTTGGTCAAG 515836 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTC 7848 ||||| ||||| ||||| || | | || ||| ||| || || || || || || | Sbjct 515837 ACCATAGATGAGATCTCCTCGGGTGTGAA-TGTCTTCTCCTCGCCCTTGAACTCGACCTG 515895 Query 7849 AATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908 || | || || |||| | | ||| ||||| | | | | ||||| ||| | Sbjct 515896 GATAACTGGCTT-GCCGC--CCTTGTCGATGACCTTGAAGGGGAAGTGCTTCATGTCGGC 515952 Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968 ||||||| ||| | ||||| | ||||| || |||||||| || || || ||||| Sbjct 515953 CTGGACCTCAGCGTCGGCGAACTTGCGACCGATGAGGCGCTTTGCGTCGAAGACGGTGTT 516012 Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 |||||||||||| ||||||||| || | ||| || || ||||| || Sbjct 516013 GACGGGGTTCATGGCGACTTGGTTCTTTGCGGAGTCACCAATGAGACGCTC 516063 >seq8 Length=1152135 Score = 149 bits (164), Expect = 8e-31 Identities = 242/348 (70%), Gaps = 3/348 (1%) Strand=Plus/Plus Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| |||||| | | ||||| || | |||||||||||| || || || || || Sbjct 882299 GAAGTGGTCAAGGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGAGTGTCTCCAGCAGT 882358 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 || ||||| |||| ||| || | |||| | | || ||||| || |||||||| Sbjct 882359 AGCCTTGACGGTGAAGACACCACCCTGGATGTGCAGAAGAGAGACATCGAAAGTACCACC 882418 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---ATCGAGACCGTA 7611 ||| || || | ||||| |||||| | || | ||| || | |||||||||| Sbjct 882419 ACCAAGATCGTAGATGAGGACGTTCCTCTCCTTGTCAGACTTTCCGGAACCGAGACCGTA 882478 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671 |||||||| || || || || || || || ||||| ||| ||| ||||||||||| | Sbjct 882479 GGCGATAGCGGCGGCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGC 882538 Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || || || || ||||| || || ||||| |||||||| ||||| || | ||| Sbjct 882539 ACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGAC 882598 Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || | | ||| ||||| ||||| | | || |||| || ||||| Sbjct 882599 GGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCGACCTCCTTCAT 882646 >seq16 Length=840418 Score = 132 bits (146), Expect = 6e-26 Identities = 401/614 (65%), Gaps = 9/614 (1%) Strand=Plus/Plus Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCC 105522 ||||| ||||||| ||| |||| || |||| |||||| || || | || || | Sbjct 26887 TCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCAC 26946 Query 105523 TGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCT 105582 | | || || | || || ||| || || | | || ||| || |||||||| | || Sbjct 26947 TCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCA 27006 Query 105583 GGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAA 105642 |||||||||| || | ||||| || ||| | |||| || | || || ||| Sbjct 27007 GGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTG 27066 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 || | || || || | | | || ||||||||||| || | |||| || | | Sbjct 27067 CGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCA 27126 Query 105703 CCTTTACGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAA 105758 ||| ||| ||| | || | | |||||| | || || ||| || || || | Sbjct 27127 CCTGGACGCTTGTTGCCACCCTGG-TCGACATAGCGAGCAGTGTTGTTGTATACACGGAG 27185 Query 105759 CATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACG 105818 ||| ||||| | ||||| |||||||| || || |||| || | ||| | | ||||| Sbjct 27186 CATGGGAATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACG 27245 Query 105819 TACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTT 105878 | ||| |||| | |||||||| ||||| ||| ||| |||||| || Sbjct 27246 AATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTT 27305 Query 105879 TACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGA 105938 | ||| |||||||| |||||||| || || ||||| | | || ||||| || || || Sbjct 27306 GAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGA 27365 Query 105939 CATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACC 105998 |||||||||| ||||| || || ||||||| || || | || || |||| | | Sbjct 27366 CATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA--C 27423 Query 105999 TTTCGATA-ACG-CTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCA 106056 ||| || | | | ||||| || || | | | | || || || | || ||||| ||| Sbjct 27424 TTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCA 27483 Query 106057 ATAGCGACGCGCAT 106070 | ||| || ||||| Sbjct 27484 ACAGCAACACGCAT 27497 >seq4 Length=1543048 Score = 118 bits (130), Expect = 1e-21 Identities = 224/328 (68%), Gaps = 10/328 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 865705 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTAGACTTGACCTCGAAGACACCA 865764 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | | ||| | | | || | ||| || ||||||||||||| || | | |||| Sbjct 865765 GCCTGAATCTCGAGAATGGAGATATCGAAAGTACCACCACCCAAATCGTAGACAGCTACG 865824 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| ||| || ||| || |||||||| |||| ||| || || || ||||| Sbjct 865825 ------ACGTTGTCGGTGGCCTTGTCAAGACCGTAGGCGAGAGCGGCAGCGGTGGGTTCG 865878 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGTC 7694 || | | ||| ||| ||| || ||||| || ||| | || || || || ||||| | Sbjct 865879 TTGACGACACGGAGAACGTTGAGACCAGCGAT--TTGACCAGCGTCCTTGGTAGCTTGAC 865936 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || | Sbjct 865937 GCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGTTCTTGCCCA 865996 Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782 || || || || | || ||||| || Sbjct 865997 TGTATGACTCGGCAGTCTCCTTCATCTT 866024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132172806360