Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq16 257 2e-63 seq5 122 1e-22 >seq16 Length=840418 Score = 257 bits (284), Expect = 2e-63 Identities = 1117/1744 (64%), Gaps = 41/1744 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 |||||| ||||| ||||||| || || | || || || || || || || || | Sbjct 27513 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGATGACATCGAGAAGGC 27454 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| |||||| | ||||| | ||| |||| ||||| | || || | | Sbjct 27453 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 27395 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || |||||| ||| |||||||| || ||||| || | | ||||||| Sbjct 27394 TCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 27335 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||| | |||||||||| ||| |||| ||||| ||||| ||| |||| Sbjct 27334 ACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 27275 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 | ||||| || | || | || | | || | | ||| || | | || || Sbjct 27274 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACT--GGCTCATACATCGGTGGCAC 27217 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || ||| ||||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 27216 TAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 27157 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||| |||| | ||| ||||| ||| || |||| |||| || |||||||| Sbjct 27156 TGTCGACCAGGGTGGCAACAAGCGTCC--AGGTGCCT-TCGCCATCTACCTCGAGCCATG 27100 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | | |||||||| |||| ||||| || | ||||||| || Sbjct 27099 GCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 27040 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | ||||||||||||| |||||| |||||||| || |||||||||||| | ||| | Sbjct 27039 CGCT--CGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAA 26982 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 || | ||||| ||| | || | || || || || || || ||| |||||| | Sbjct 26981 GACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTAC 26922 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG--GAAGAAAGTCGGGCGACTGCGA 112257 ||||| || || ||||| || ||| | |||||| | |||| || || | || Sbjct 26921 GGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGTCG--CGAGA 26864 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 | || | || | | ||| | || || || || | || ||||||||||||| | Sbjct 26863 CTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACC 26804 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | |||||| ||||| ||||| || |||| ||||| || || ||||| | ||| | Sbjct 26803 CCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCA 26744 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 || || |||||||| || || || || |||| | || | |||||| |||| Sbjct 26743 TCCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTG 26684 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTT 112496 | || ||| | || || | || || || | ||| || | || || | ||| Sbjct 26683 TTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACA-AGGCCGGCGTGTTT 26625 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 || | | || ||||||||||| || | ||||| ||| | |||| | || Sbjct 26624 GACTTCAAGAAGCTCCACGAAGTCACACAGGTCGTCACCCGCAACTTGAACAAGATCATC 26565 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 || || ||||| || || || || || | | ||||| || || Sbjct 26564 GAGGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATC 26505 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 ||| | ||||| |||||||| || |||| ||| | |||| | || || || Sbjct 26504 GGTATGGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCA 26445 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 |||||||| ||| | |||| | || || ||||| || || || || ||||| Sbjct 26444 GACGAAGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACT 26385 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 | | || | ||| ||| |||||| || | |||| || || ||||| | Sbjct 26384 TCCTCATGCGACATCGCAAAGGAACTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTA 26325 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACT 112854 || || || | || || | ||||||| |||| || | ||| | || | || |||| Sbjct 26324 TCCCAGGGTATCCTCCAGTACGATATGT-GGAATGTCACACCTA-CTGACCTCTGGGACT 26267 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||| |||| ||||| || ||| | ||| | || ||| || | || |||| Sbjct 26266 GGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAACTCGCTGCTCATTGCAC 26207 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | |||||||| |||||||| |||| || |||| || || || ||||| || || |||| Sbjct 26206 CCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACA 26147 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT- 113033 | | ||||||||| | | |||||| || ||||| | |||||||| ||| Sbjct 26146 CCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAAC--CCATG 26089 Query 113034 -CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 113092 | | | ||||| || || ||||| ||||| || | |||||| | | || | Sbjct 26088 GTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCAT 26029 Query 113093 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTA 113152 | || ||||| ||| | ||| | || || || || | |||| | || Sbjct 26028 CGCCGATGGAGGTTCGATTGCCAGGATTCCCAACATCCCTGAGGAGACAAAGACCCTTTA 25969 Query 113153 CCGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGT 113210 | || || ||||| ||| | |||||| ||||||| |||||||| || |||||| Sbjct 25968 CAAGACCGTCTGGGAGATCTCGCAGCGAAGGA--TCATTGAGATGGCCGCTGACCGTGGT 25911 Query 113211 CGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCA 113268 |||||||| | |||| ||| | || | |||| | || || ||| || Sbjct 25910 GCTTTCATTGACC--AGTCTCAGTCGCTAAACATCCACATGAAGGAGCCTACTATGGGCA 25853 Query 113269 AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 113328 || || ||||||||||| | | |||||| |||||||| || || ||||| || | Sbjct 25852 AGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTCAAGACTGGCATGTACTATC 25793 Query 113329 TCCG 113332 |||| Sbjct 25792 TCCG 25789 >seq5 Length=1540376 Score = 122 bits (134), Expect = 1e-22 Identities = 286/429 (67%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 ||||| || ||||||||||||||||||| ||||| ||| | | || | |||||| Sbjct 775836 GCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTC 775777 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||||||| Sbjct 775776 AAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAG 775717 Query 102312 GGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAACCAACGACT 102371 || | ||| || || || || ||| | | | || || | | Sbjct 775716 GGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCA 775657 Query 102372 GAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTCATATTGGAT 102431 ||| || | |||| | | |||||||| ||||||||| ||| ||| | || Sbjct 775656 GAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGAC 775597 Query 102432 GCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAATATATTGAGTAT 102491 || || ||||||||||| |||| ||||| || |||| | |||| || |||| Sbjct 775596 GCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTC 775537 Query 102492 GTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA-ATTTGGAACTCCAAGAATCC 102550 || |||| | || || | || || | || | | | || ||| || || Sbjct 775536 GTCGCTGACCGTCTGCTGTTGGCCCTC-GGCAACGTCAAGGTCTACCACGCCACCAACCC 775478 Query 102551 ATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGT 102610 || |||||||||||||||||| || | || ||||| ||||||||||| ||| | || Sbjct 775477 CTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGT 775418 Query 102611 TGGGGACTA 102619 || ||||| Sbjct 775417 CGGCGACTA 775409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741787016880