Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq16 194 2e-44 seq35 86.0 7e-12 seq34 86.0 7e-12 seq15 86.0 7e-12 seq9 86.0 7e-12 seq7 86.0 7e-12 >seq16 Length=840418 Score = 194 bits (214), Expect = 2e-44 Identities = 1098/1744 (63%), Gaps = 37/1744 (2%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 || ||||| ||||| || || ||||||||||||||||| || || | ||||| |||| Sbjct 25789 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 25847 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || || ||| | ||| | |||||||||||| || ||||| Sbjct 25848 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAA 25907 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG--GCTA-ATTTCCCAGACAGT 109583 |||||| ||||| ||||| || ||||| | || | || | || |||||||| || Sbjct 25908 AGCACCACGGTCAGCGGCCATCTCAATGATCC---TTCGCTGCGAGATCTCCCAGACGGT 25964 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||| | |||| | || || || |||| || | ||| || || ||| | Sbjct 25965 CTTGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGGGAATCCTGGCAATCGAACCTCCATC 26024 Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC--- 109700 | || | | |||||| | | ||||| ||||| | | | || | ||| Sbjct 26025 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCA---TGTCGACAAGGTCCTT 26081 Query 109701 -AACAAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758 | ||| ||| |||||| || || |||||||| || || ||| |||||| Sbjct 26082 GAGCAACCATGG--GTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATG 26139 Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818 || | ||||| || ||||| ||||| |||||||| || || |||| |||||| || || Sbjct 26140 TTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTT 26199 Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878 |||||||| || ||||| || ||| || | ||| | | | | ||| || Sbjct 26200 GGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGA 26259 Query 109879 GCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938 | |||| || | | || || || | || || ||||||||| || || Sbjct 26260 GACGCCCAGTCCCAGAGGTCAGTAG-----GTGTGAC-ATTCCACATATCGTACTGGAGG 26313 Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998 | ||||| | | ||||| || | | | ||| ||| | || ||| || | Sbjct 26314 ATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATG 26373 Query 109999 TCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058 ||| |||| | || || ||||| || || ||||| || || || || | Sbjct 26374 TCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTC 26433 Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118 || || || | ||||| ||||| | | || |||| || ||||| ||| Sbjct 26434 TTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGA 26493 Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178 ||||| | ||| ||||| || || | ||| ||| || || ||| || ||||| Sbjct 26494 ACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAG 26553 Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGT 110238 |||| ||||||| | || | || || || || |||| ||| ||||| Sbjct 26554 TGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGC 26613 Query 110239 TTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCA 110298 || | | | || ||| | || | | |||| | || || |||| ||| || Sbjct 26614 TTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCC 26673 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 | ||||| |||| ||| || ||||||| |||| ||| || || |||| |||| Sbjct 26674 AAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTG 26733 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 || || ||| ||| | ||||||||| || ||| |||||| || ||||| ||| Sbjct 26734 GAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAG 26793 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCG 110478 ||||| | ||| ||||||| || ||||||| || || ||||| | ||| | | Sbjct 26794 AGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGT 26853 Query 110479 GCGGGGACAGTTGCGTTAGCGAGACCT----TCCTCCTCGTACTTGGTGTACAAGTCCTC 110534 ||| | ||||| || ||| | | | || |||||| | ||||| | || Sbjct 26854 GCGCGAACAGTCTCG----CGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTC 26909 Query 110535 AAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCA 110594 ||||| | ||||| ||||| | || || || || || || | || | ||| Sbjct 26910 GAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCA 26969 Query 110595 ATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAG 110654 || || || | ||| | ||||||||| |||||||||||||||| || |||| || Sbjct 26970 GTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAG 27029 Query 110655 GTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGAT 110714 || || || |||| || | || ||||| ||| || || | ||| | | || Sbjct 27030 ATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGAC 27089 Query 110715 ATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTG 110771 || | ||||||||| ||||| |||| |||| || || ||| || |||| Sbjct 27090 GTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTG 27149 Query 110772 GTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTG 110831 || |||||||| || ||| ||| | || | |||||| ||||| | |||| ||| Sbjct 27150 GTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGT 27209 Query 110832 ACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAAT 110891 || || || || | || || | | ||||||||| ||| | | | ||||| Sbjct 27210 TCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAAT 27269 Query 110892 ACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAA 110950 ||| || || ||| || ||||| ||| ||||||| | ||||| || || | Sbjct 27270 ACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT-TGAGTGTGTCGTAAATGCCGTCGA 27328 Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010 | || |||| || | || || ||||| || ||||| || || || || |||| Sbjct 27329 TGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCG 27388 Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGT 111070 | ||||| | || || | || || |||| ||| ||||| | || ||| || | Sbjct 27389 CGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCT 27448 Query 111071 CGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATT 111130 ||| || | || | |||||||| |||| ||||| ||||||| ||| | || Sbjct 27449 CGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTT 27508 Query 111131 GAGG 111134 | || Sbjct 27509 GTGG 27512 Score = 111 bits (122), Expect = 2e-19 Identities = 274/408 (67%), Gaps = 11/408 (3%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || | | || || | || |||| |||| ||||| ||| | || Sbjct 355757 TCGAAACGGCCGGGTCTCATGAGCGCCTTGTCCAGAACATCGGGTCGGTTAGTACCAGCC 355816 Query 11566 ATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || || | ||| ||||| ||| ||| |||||||| ||||| |||| ||||||| Sbjct 355817 AGAACGACGACTTGCTCAGTCG---TGTTGAATCCGTCCATCTCTGTTAGAATCTGGTTG 355873 Query 11623 ATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGC--CGAACGCTTCTTACCG 11679 | || || |||||||||||| | | | |||| ||| || |||| Sbjct 355874 AGAGTTGCCTCTCGCTCATCGTTGCCACCACCGAAGTTCTGCTTCGATCGGGCACGACCG 355933 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 | |||||||||||| || ||||| | ||| || || | | || || | |||| Sbjct 355934 ATAGCGTCAATCTCGTCAATGAAGATGATGCAGGGCGTGCTCTTGCGCGCATTGGCGAAC 355993 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA- 11798 | || || |||||| || |||||||| ||||||||||| ||||| | | || Sbjct 355994 AAGTCTCGGACACGCGATGCACCAACACCAACGAACATCTCGACGAACTCAGAACCACTG 356053 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 |||||||| ||| ||||| ||||| || || | || || || ||||||||||| Sbjct 356054 ACACTGAA-GAAAGGAACGCCTGACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACC 356112 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||| || | |||| || | || || || |||||||| ||||| Sbjct 356113 AGTACCTGGGGATCCAGATAGGATAGCACCGCGAGGGATCTTCGCACC 356160 >seq35 Length=270785 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 194489 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 194548 Query 136777 GGGAACA 136783 | || || Sbjct 194549 GTGACCA 194555 >seq34 Length=280576 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 114334 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 114393 Query 136777 GGGAACA 136783 | || || Sbjct 114394 GTGACCA 114400 >seq15 Length=850735 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 134086 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 134145 Query 136777 GGGAACA 136783 | || || Sbjct 134146 GTGACCA 134152 >seq9 Length=1121683 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 465061 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 465002 Query 136777 GGGAACA 136783 | || || Sbjct 465001 GTGACCA 464995 >seq7 Length=1168273 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 1128484 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 1128425 Query 136777 GGGAACA 136783 | || || Sbjct 1128424 GTGACCA 1128418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975418386200