Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq10 100 2e-15 seq4 86.0 5e-11 >seq10 Length=1117896 Score = 100 bits (110), Expect = 2e-15 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTGCT--T 550376 |||| || | || ||||||||||| || | || |||| |||| ||| ||| || Sbjct 515861 CACCCGAGGAGATCTCATCTATGGTCTTGACCAAGATGAGGGAAACTGCCGAGTCCTACC 515802 Query 550377 TTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCAC 550436 | | ||| || |||| | || || | ||||| || ||||| || || ||||| | Sbjct 515801 TCGGTGG-CA--CCGTTAACAACGCTGTCGTCACTGTTCCCGCATACTTCAACGACTCGC 515745 Query 550437 AACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCA 550496 ||||||| ||||| || |||||||| | ||||| || || || || || ||||| |||| Sbjct 515744 AACGTCAGGCTACCAAGGATGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCA 515685 Query 550497 ATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 | || |||||||| ||||| | || || || ||||| || Sbjct 515684 ACGAGCCTACTGCCGCTGCCATCGCCTACGGTCTTGACAA 515645 >seq4 Length=1543048 Score = 86.0 bits (94), Expect = 5e-11 Identities = 114/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 550381 TGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 ||| |||||| || | | | || || | || || || || || || || ||||| || | Sbjct 865996 TGGGCAAGAACGTCAAGAACGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCCCAGC 865937 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||||||||| || || ||||| | || ||||| || || ||||| ||| | |||| | Sbjct 865936 GTCAAGCTACCAAGGACGCTGGTCAAATCGCTGGTCTCAACGTTCTCCGTGTCGTCAACG 865877 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| || ||||| || || || || || ||||| || Sbjct 865876 AACCCACCGCTGCCGCTCTCGCCTACGGTCTTGACAA 865840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029291822123710