Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 >seq4 Length=1543048 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29751 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTC 29810 ||| ||| | ||||| || || || || || | ||| ||||| |||||||| || Sbjct 1297989 GTTGATCTTGAGTGTAGGGAACTCTCGCGGTTCGCGCTCCAGCTGCACCTTCAGCGCATC 1297930 Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 | ||| || | ||| ||||| ||||| |||| || || ||| || || ||| Sbjct 1297929 TATGTGGTCGATGTATACGTGTGCGTCGCCCATTGTATGTGTAAATGTACCGGGCGTTAG 1297870 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 || || ||||| | ||||| ||||| || | |||| ||||||||| || ||||| Sbjct 1297869 GTCGCACACATGAGCTAGCATGTGAGTGAGAAGCGCGTAGGAGGCGATGTTGAAAGGTAC 1297810 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 29963 ||||| ||||| || | || ||||||||||| Sbjct 1297809 ACCGAGACCCATATCGCAGGATCTCTGGTAGAG 1297777 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 30150 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 ||||||| | |||||| || || ||||||| ||||||||| ||||| || || ||||| | Sbjct 1297558 CATGTCCCTTGTACTCGGCGCCAAAATGCCGCCACTGGAAGCCGTATACTGGACCCAGCT 1297499 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || || || ||| | | |||| |||||| | | || | |||||| ||| Sbjct 1297498 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 1297439 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||||||||| | || || ||||| ||| || |||| ||| ||| |||| Sbjct 1297438 CCCAGATCTTGATACCAGCGTCCGAGAGAGACTTGCTGTGTGTGCTGCCTGCGACAAACC 1297379 Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | |||| ||| | | ||||| ||| || || || || ||||||||||| Sbjct 1297378 ATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 1297324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617206577867