Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq4 91.5 1e-13
>seq4
Length=1543048
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 29751 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTC 29810
||| ||| | ||||| || || || || || | ||| ||||| |||||||| ||
Sbjct 1297989 GTTGATCTTGAGTGTAGGGAACTCTCGCGGTTCGCGCTCCAGCTGCACCTTCAGCGCATC 1297930
Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870
| ||| || | ||| ||||| ||||| |||| || || ||| || || |||
Sbjct 1297929 TATGTGGTCGATGTATACGTGTGCGTCGCCCATTGTATGTGTAAATGTACCGGGCGTTAG 1297870
Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930
|| || ||||| | ||||| ||||| || | |||| ||||||||| || |||||
Sbjct 1297869 GTCGCACACATGAGCTAGCATGTGAGTGAGAAGCGCGTAGGAGGCGATGTTGAAAGGTAC 1297810
Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 29963
||||| ||||| || | || |||||||||||
Sbjct 1297809 ACCGAGACCCATATCGCAGGATCTCTGGTAGAG 1297777
Score = 87.8 bits (96), Expect = 1e-12
Identities = 161/235 (69%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 30150 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208
||||||| | |||||| || || ||||||| ||||||||| ||||| || || ||||| |
Sbjct 1297558 CATGTCCCTTGTACTCGGCGCCAAAATGCCGCCACTGGAAGCCGTATACTGGACCCAGCT 1297499
Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
| || || || ||| | | |||| |||||| | | || | |||||| |||
Sbjct 1297498 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 1297439
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328
|||||||||| | || || ||||| ||| || |||| ||| ||| ||||
Sbjct 1297438 CCCAGATCTTGATACCAGCGTCCGAGAGAGACTTGCTGTGTGTGCTGCCTGCGACAAACC 1297379
Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
| |||| ||| | | ||||| ||| || || || || |||||||||||
Sbjct 1297378 ATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 1297324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617206577867
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |