Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq16 277 3e-69
seq5 266 6e-66
>seq16
Length=840418
Score = 277 bits (306), Expect = 3e-69
Identities = 1037/1605 (65%), Gaps = 62/1605 (4%)
Strand=Plus/Plus
Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCC--CCAGCCGTGCA 212634
|||||| |||| || |||||||||||||| ||||| || || ||| |||||| |
Sbjct 25777 GCAGCCATGGTACGGAGATAGTACATGCCAGTCTTGAGACCA--GCCTTCCAGCCAGCAA 25834
Query 212635 TGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTA 212694
|||||| | |||| |||| | || || || | || || || |
Sbjct 25835 AGTGCATAGAAGTGA---TCTTGCCCATAGTAGGCTCCT-----TCATG-------TGGA 25879
Query 212695 GGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATAT 212754
||| || |||||| |||||| ||||| | | | |||||||||||| || |||||
Sbjct 25880 TGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTCAATGATCC 25939
Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT-TCTTTGAGGTCCTCTGGGAAGCCG 212813
|| ||| |||| |||||| ||||||||| | | |||||| ||||| |||| | |
Sbjct 25940 TTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCTTTGTC-TCCTCAGGGATGTTG 25998
Query 212814 GGGATGTTCTGCA--CAGACCCCCTGTGT--ATGGTCAGCTGCAGGCGCATGTCCTCGTT 212869
|| || | ||| | ||| || | ||| | | | | ||||| |||
Sbjct 25999 GGAATCCTG-GCAATCGAACCTCCATCGGCGATGATACGGTTCTT---CATGTTCTCAGA 26054
Query 212870 CCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACC 212929
||| || ||| || | ||| ||||| || |||||||| | |||||| |||||
Sbjct 26055 CCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACC 26114
Query 212930 TGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCC 212989
| ||| || | | || | ||| || ||||| ||||||| || ||||||||| ||
Sbjct 26115 AGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCC 26174
Query 212990 CAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049
||||||||||| |||| ||| || |||||||| || | || || ||| | || ||
Sbjct 26175 CAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACC 26234
Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109
|||||| | || | || ||||||||||| | ||| ||||
Sbjct 26235 GTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGT-AGGTG------ 26287
Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169
| || |||||||| || |||| | ||| || | | ||||| || | ||| |
Sbjct 26288 --TGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGT 26345
Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229
||| || ||| | ||||| || | ||||| || | || ||||| | ||||||
Sbjct 26346 CTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGAT 26405
Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCA- 213288
||| || || || | ||||||||||||| || || ||| ||| || | |
Sbjct 26406 GGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAG 26465
Query 213289 TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT 213348
|||| |||| |||| || || || || || || || |||||||||| ||| | | ||
Sbjct 26466 TGCGA-GGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGT 26524
Query 213349 TAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407
| | | || ||| || | ||||| |||| |||||||||||||| | ||||
Sbjct 26525 TGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTG 26583
Query 213408 CGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCC 213467
|||||| | || | ||||| | | || | || | | |||||| | || ||
Sbjct 26584 CGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAG 26643
Query 213468 TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT 213527
| ||||| ||||||||| | |||| ||||||||| || ||||| | || |
Sbjct 26644 TCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCG 26703
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| ||||| |||||||||||| || |||||||| || ||||||| |||
Sbjct 26704 GTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGG 26763
Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647
|| ||| |||| || |||||||||||||| ||||| || ||||| |||
Sbjct 26764 TTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGT 26823
Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGC 213707
| | | || || | ||| || | || | || || | | ||| || |
Sbjct 26824 GCCTCAAGGATGGCGTACCAAAGCT-TTTGTGCGCGAACAGTCTCGCGAC----CCTTGT 26878
Query 213708 GTAGC--CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTC 213765
|| |||||| ||||| || | | |||||| | || |||| | | || |
Sbjct 26879 TCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGC 26938
Query 213766 CCGGACA-GGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATG 213824
| || || | |||| ||||| || |||||| |||| ||| || | || ||||
Sbjct 26939 CAGGGCACTCGTTCGGG-CACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATG 26997
Query 213825 AACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCA 213884
|| ||||| || | |||||| ||| ||| || || | | | ||| ||| ||
Sbjct 26998 AAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCG 27057
Query 213885 GAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATG 213944
||| |||||||| || || ||| |||||| ||| |||||||| ||||| | |||||||
Sbjct 27058 TGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATG 27117
Query 213945 GCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTT 213997
|| ||||| || | || | ||||| |||||||| | | | || | || ||||
Sbjct 27118 GCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTT 27173
Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057
| | | || || | ||| | || || || || |||||| || || | || || ||
Sbjct 27174 GTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGA 27233
Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117
||| | || | | | | || | ||| || || || || ||| |||||||||||
Sbjct 27234 GCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAA 27293
Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162
|| ||| | | | || || |||||| | |||||||| ||
Sbjct 27294 CGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTC 27338
>seq5
Length=1540376
Score = 266 bits (294), Expect = 6e-66
Identities = 576/851 (68%), Gaps = 28/851 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| || || | ||||| |||||||| ||||| || ||| || ||||||||
Sbjct 775405 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 775464
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC--AGGCCCATCTGTTC 47952
||||||| ||||||||||| | || || ||| ||| | ||| ||| |
Sbjct 775465 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC----- 775519
Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012
||||| | || |||||| |||||||||||| ||||||| || ||||||||| |
Sbjct 775520 -AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAG 775578
Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072
|| | || | || | | | ||||||| ||| |||| |||||||| |
Sbjct 775579 CAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGAT 775638
Query 48073 AATCTGCT-TAACGCGGGACTCTGAG---GGTTTGTTGCGCAGGTGCTTGGCATAGAGCA 48128
|| ||| | || ||||||| | || ||||| ||| | | |||| |
Sbjct 775639 GATA-GCTCTGACA---GACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGA---AGAGAA 775691
Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188
|||||| ||||| |||||| ||| ||||| ||| ||||||| |||||||||| |
Sbjct 775692 GGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTA 775751
Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248
|||| ||||| | || | || ||||||||||| || | |||||||| || |||||
Sbjct 775752 GACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGA 775811
Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308
|||| ||||| || || ||||| || || | | |||| | | ||||||||| |
Sbjct 775812 AGATACCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGAGTTCTTGTCGG 775871
Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368
||||||| || |||||||| |||||||| |||||| || || | || |||||
Sbjct 775872 AGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGT 775931
Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTAC 48427
|||||| | | ||| || | || | ||| | || || || ||| | |||
Sbjct 775932 TGAAGAGGTACCTGCGCT-GCTTGGGCTCGCTGATGTATGTGTCGATGAGCAGAGAGTAG 775990
Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487
|||| ||||| || ||||| || ||| ||||| ||||||||| | |||||
Sbjct 775991 GTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGG 776050
Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547
| || ||||| | ||||||| ||| | || ||||| ||||| || ||||| || ||
Sbjct 776051 ATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCT 776110
Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA-GC--ATTC 48604
|| |||||||| ||||| || | ||| |||||||| | | ||||| || |||
Sbjct 776111 GCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTC 776170
Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664
||| | || | ||| ||| ||||| | || || | |||||||| || || ||
Sbjct 776171 CAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCC 776230
Query 48665 TTTTTGTACAT 48675
|| ||||||||
Sbjct 776231 TTCTTGTACAT 776241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931531880111360
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