Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq16 277 3e-69 seq5 266 6e-66 >seq16 Length=840418 Score = 277 bits (306), Expect = 3e-69 Identities = 1037/1605 (65%), Gaps = 62/1605 (4%) Strand=Plus/Plus Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCC--CCAGCCGTGCA 212634 |||||| |||| || |||||||||||||| ||||| || || ||| |||||| | Sbjct 25777 GCAGCCATGGTACGGAGATAGTACATGCCAGTCTTGAGACCA--GCCTTCCAGCCAGCAA 25834 Query 212635 TGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTA 212694 |||||| | |||| |||| | || || || | || || || | Sbjct 25835 AGTGCATAGAAGTGA---TCTTGCCCATAGTAGGCTCCT-----TCATG-------TGGA 25879 Query 212695 GGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATAT 212754 ||| || |||||| |||||| ||||| | | | |||||||||||| || ||||| Sbjct 25880 TGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTCAATGATCC 25939 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT-TCTTTGAGGTCCTCTGGGAAGCCG 212813 || ||| |||| |||||| ||||||||| | | |||||| ||||| |||| | | Sbjct 25940 TTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCTTTGTC-TCCTCAGGGATGTTG 25998 Query 212814 GGGATGTTCTGCA--CAGACCCCCTGTGT--ATGGTCAGCTGCAGGCGCATGTCCTCGTT 212869 || || | ||| | ||| || | ||| | | | | ||||| ||| Sbjct 25999 GGAATCCTG-GCAATCGAACCTCCATCGGCGATGATACGGTTCTT---CATGTTCTCAGA 26054 Query 212870 CCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACC 212929 ||| || ||| || | ||| ||||| || |||||||| | |||||| ||||| Sbjct 26055 CCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACC 26114 Query 212930 TGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCC 212989 | ||| || | | || | ||| || ||||| ||||||| || ||||||||| || Sbjct 26115 AGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCC 26174 Query 212990 CAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049 ||||||||||| |||| ||| || |||||||| || | || || ||| | || || Sbjct 26175 CAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACC 26234 Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 |||||| | || | || ||||||||||| | ||| |||| Sbjct 26235 GTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGT-AGGTG------ 26287 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169 | || |||||||| || |||| | ||| || | | ||||| || | ||| | Sbjct 26288 --TGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGT 26345 Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229 ||| || ||| | ||||| || | ||||| || | || ||||| | |||||| Sbjct 26346 CTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGAT 26405 Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCA- 213288 ||| || || || | ||||||||||||| || || ||| ||| || | | Sbjct 26406 GGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAG 26465 Query 213289 TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT 213348 |||| |||| |||| || || || || || || || |||||||||| ||| | | || Sbjct 26466 TGCGA-GGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGT 26524 Query 213349 TAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407 | | | || ||| || | ||||| |||| |||||||||||||| | |||| Sbjct 26525 TGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTG 26583 Query 213408 CGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCC 213467 |||||| | || | ||||| | | || | || | | |||||| | || || Sbjct 26584 CGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAG 26643 Query 213468 TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT 213527 | ||||| ||||||||| | |||| ||||||||| || ||||| | || | Sbjct 26644 TCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCG 26703 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| |||||||||||| || |||||||| || ||||||| ||| Sbjct 26704 GTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGG 26763 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||| ||||| || ||||| ||| Sbjct 26764 TTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGT 26823 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGC 213707 | | | || || | ||| || | || | || || | | ||| || | Sbjct 26824 GCCTCAAGGATGGCGTACCAAAGCT-TTTGTGCGCGAACAGTCTCGCGAC----CCTTGT 26878 Query 213708 GTAGC--CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTC 213765 || |||||| ||||| || | | |||||| | || |||| | | || | Sbjct 26879 TCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGC 26938 Query 213766 CCGGACA-GGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATG 213824 | || || | |||| ||||| || |||||| |||| ||| || | || |||| Sbjct 26939 CAGGGCACTCGTTCGGG-CACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATG 26997 Query 213825 AACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCA 213884 || ||||| || | |||||| ||| ||| || || | | | ||| ||| || Sbjct 26998 AAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCG 27057 Query 213885 GAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATG 213944 ||| |||||||| || || ||| |||||| ||| |||||||| ||||| | ||||||| Sbjct 27058 TGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATG 27117 Query 213945 GCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTT 213997 || ||||| || | || | ||||| |||||||| | | | || | || |||| Sbjct 27118 GCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTT 27173 Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057 | | | || || | ||| | || || || || |||||| || || | || || || Sbjct 27174 GTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGA 27233 Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 ||| | || | | | | || | ||| || || || || ||| ||||||||||| Sbjct 27234 GCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAA 27293 Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 || ||| | | | || || |||||| | |||||||| || Sbjct 27294 CGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTC 27338 >seq5 Length=1540376 Score = 266 bits (294), Expect = 6e-66 Identities = 576/851 (68%), Gaps = 28/851 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || ||| || |||||||| Sbjct 775405 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 775464 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC--AGGCCCATCTGTTC 47952 ||||||| ||||||||||| | || || ||| ||| | ||| ||| | Sbjct 775465 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC----- 775519 Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| | || |||||| |||||||||||| ||||||| || ||||||||| | Sbjct 775520 -AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAG 775578 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 || | || | || | | | ||||||| ||| |||| |||||||| | Sbjct 775579 CAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGAT 775638 Query 48073 AATCTGCT-TAACGCGGGACTCTGAG---GGTTTGTTGCGCAGGTGCTTGGCATAGAGCA 48128 || ||| | || ||||||| | || ||||| ||| | | |||| | Sbjct 775639 GATA-GCTCTGACA---GACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGA---AGAGAA 775691 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||| ||||| |||||| ||| ||||| ||| ||||||| |||||||||| | Sbjct 775692 GGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTA 775751 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||| | || | || ||||||||||| || | |||||||| || ||||| Sbjct 775752 GACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGA 775811 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || || | | |||| | | ||||||||| | Sbjct 775812 AGATACCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGAGTTCTTGTCGG 775871 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||||| || |||||||| |||||||| |||||| || || | || ||||| Sbjct 775872 AGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGT 775931 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||||| | | ||| || | || | ||| | || || || ||| | ||| Sbjct 775932 TGAAGAGGTACCTGCGCT-GCTTGGGCTCGCTGATGTATGTGTCGATGAGCAGAGAGTAG 775990 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 |||| ||||| || ||||| || ||| ||||| ||||||||| | ||||| Sbjct 775991 GTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGG 776050 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | || ||||| | ||||||| ||| | || ||||| ||||| || ||||| || || Sbjct 776051 ATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCT 776110 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA-GC--ATTC 48604 || |||||||| ||||| || | ||| |||||||| | | ||||| || ||| Sbjct 776111 GCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTC 776170 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | || | ||| ||| ||||| | || || | |||||||| || || || Sbjct 776171 CAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCC 776230 Query 48665 TTTTTGTACAT 48675 || |||||||| Sbjct 776231 TTCTTGTACAT 776241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531880111360