Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq16 253 4e-62
seq5 239 8e-58
>seq16
Length=840418
Score = 253 bits (280), Expect = 4e-62
Identities = 959/1480 (65%), Gaps = 55/1480 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476
|| || ||||| |||||||||||||| ||||| ||||||| |||| || |||
Sbjct 26386 GTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCT 26445
Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
|| ||| || | || || | ||| | ||||| || || || || || ||||||
Sbjct 26446 GACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCG 26505
Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTC 221595
||||| | ||| | |||| ||||| || ||| || || || |||||| ||
Sbjct 26506 ATGGGTCGGTGGCGGAAGTTGCT-GCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTC 26564
Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655
||| | ||||| | ||| | |||| ||| | || ||| ||||||| |
Sbjct 26565 GATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCT------T 26618
Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715
||| | ||| ||||| | | || | || ||||||| ||||||| ||
Sbjct 26619 GAAGTCAAACACGCCGGCCTTGTAG------TCGACAAAAGAAGGCAGGGCAAGAGAAGC 26672
Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775
|| ||| || || || ||||| || ||| |||| | ||||| || || |||||
Sbjct 26673 CAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTT 26732
Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835
| || |||||| || |||| || || || |||||| ||| ||||||||||||
Sbjct 26733 GGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTA 26792
Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895
|||||||||||| |||||||| ||| ||| | || || || ||| || | |
Sbjct 26793 GAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTG 26852
Query 221896 GGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT---TTTCATACCCG--GTATAGAGC 221950
|||| || ||| || ||| ||| | ||| | || || | ||| |||||
Sbjct 26853 TGCGCGAACAGTC-TCGCGAC-----CCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGC 26906
Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010
| | || | ||||||||| | ||| | ||||| || ||| | || ||||||||
Sbjct 26907 TT--CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGT 26964
Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070
|||||| |||||||| || | || |||||||||||| || |||||||| || |
Sbjct 26965 GTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 27024
Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130
|||||||| | | || ||||||| ||||| ||| || | ||| || | || ||
Sbjct 27025 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 27084
Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190
|| | |||||||||||| ||||| || |||| ||| | || || || ||||||||||||
Sbjct 27085 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCA 27144
Query 222191 CCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249
||||| || | ||| ||| | |||| | | || || | || | || || ||
Sbjct 27145 CCCTGGTCGA-CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATT 27203
Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGAC 222307
||| ||||| ||||| ||||| | || || | | | | | | |
Sbjct 27204 AGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG-- 27261
Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367
| ||| ||||| || ||| || ||||||| || ||| ||||||| ||||| |||
Sbjct 27262 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 27321
Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGGT 222426
|| || || ||||||||| | || | || || || |||||||| || | | ||||
Sbjct 27322 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 27381
Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486
| | ||||| |||| ||| || ||||||||| ||||| |||||| ||
Sbjct 27382 -GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTC 27440
Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546
||| ||||| | | | | |||||| || |||||||| | || | ||||
Sbjct 27441 GTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAG 27500
Query 222547 CATGTACTGGGGCCTCTCCACAGGACCCTTGGAG---CTGGAGAGCAGGTACGATTTTTC 222603
||||| || || | ||| | || ||||| | || ||| || || || |||
Sbjct 27501 CATGTGTTGTGGGCGCTCGGC--GA-CCTTGCCGTTTATGCGGAGGAGATATGAACGTTC 27557
Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663
|| |||||||| |||||| | | | || ||||| | | ||| || | || | ||
Sbjct 27558 GAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 27617
Query 222664 CAGCTCCGACTT-GTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGT 222722
|||| || ||| ||| | | | | || | | | | | ||||| | | || |
Sbjct 27618 GAGCT-CGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGG--GTTG 27674
Query 222723 TCTCTTT--GGTGTCGGGGTTAACGTTGTGGTACAG--CTGCCACATGGCATCAGAGA-A 222777
||||||| | | | |||||| || | || |||||| || | || || ||||| |
Sbjct 27675 TCTCTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTAC----CACGAGAGAGA 27730
Query 222778 CGTG-TCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCAT 222836
|| | ||||||||||| ||||| || || ||||| || | || | ||| | |
Sbjct 27731 ATTGCTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGT 27790
Query 222837 AGTCAGGGTGCACGGTGGTCATGCTGGCTAGGGTCTGAGC 222876
|||| || || |||||||||| |||| ||||| |||
Sbjct 27791 AGTCGGGATGTGTGGTGGTCATGTAGGCTGCGGTCTCAGC 27830
>seq5
Length=1540376
Score = 239 bits (264), Expect = 8e-58
Identities = 570/854 (67%), Gaps = 24/854 (3%)
Strand=Plus/Minus
Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539
||| |||||||||||||||| | || ||||||||| || ||||| || || ||
Sbjct 776247 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 776188
Query 25540 AAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAAGTA 25595
|||||| | ||| |||| || || ||| | | ||||||| || | ||| || |
Sbjct 776187 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGC-GCTTCTTCATCTCCCA 776129
Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655
||| | || ||||| |||||||| ||||| || || |||||||| || ||| ||||
Sbjct 776128 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 776069
Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715
| | || ||||| || | ||||| || |||||||||||||| || || ||
Sbjct 776068 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 776009
Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775
|| || ||||| ||| || | ||| | || ||||| ||| || || |
Sbjct 776008 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACAT--CAG-CGAGCCCAA 775952
Query 25776 G-AGAGATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832
| || | | || || |||||||| |||| ||| ||||| | ||||||
Sbjct 775951 GCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGA 775892
Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
|||||| || |||||| | | ||| | | || || | | | || || || || ||
Sbjct 775891 CTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTTGTTGCATT 775832
Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952
|| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| |
Sbjct 775831 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 775772
Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012
| || |||||||| || || ||||||||||||||| | | |||||||| |
Sbjct 775771 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 775712
Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072
|||| || || |||||||| |||| | | || | | |||| || | |||
Sbjct 775711 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAG---AACAAGCCCAGCCCAGA 775655
Query 26073 GACCGTCTACAG-TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNN 26131
| | ||| | || |||||||| || || || ||||| ||| |||||||
Sbjct 775654 GTCTGTC-AGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACG 775596
Query 26132 NNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATG 26191
| ||||||||| | |||||| |||||||||| |||| |
Sbjct 775595 CACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCG 775536
Query 26192 TGGCCGACCATCTGCTGT--GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAAC 26247
| || |||| |||||||| ||| || || || || ||||| |||| | |||
Sbjct 775535 TCGCTGACCGTCTGCTGTTGGCC--CTCGGCAACGTCAAGGTCTAC--CACGCCACCAAC 775480
Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307
|| |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| |
Sbjct 775479 CCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGC 775420
Query 26308 GTCGGCGACTATCA 26321
||||||||||| ||
Sbjct 775419 GTCGGCGACTACCA 775406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928843882765760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |