Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq16 253 4e-62 seq5 239 8e-58 >seq16 Length=840418 Score = 253 bits (280), Expect = 4e-62 Identities = 959/1480 (65%), Gaps = 55/1480 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || ||||| |||||||||||||| ||||| ||||||| |||| || ||| Sbjct 26386 GTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCT 26445 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| || | || || | ||| | ||||| || || || || || |||||| Sbjct 26446 GACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCG 26505 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||| | ||| | |||| ||||| || ||| || || || |||||| || Sbjct 26506 ATGGGTCGGTGGCGGAAGTTGCT-GCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTC 26564 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||| | ||| | |||| ||| | || ||| ||||||| | Sbjct 26565 GATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCT------T 26618 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 ||| | ||| ||||| | | || | || ||||||| ||||||| || Sbjct 26619 GAAGTCAAACACGCCGGCCTTGTAG------TCGACAAAAGAAGGCAGGGCAAGAGAAGC 26672 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 || ||| || || || ||||| || ||| |||| | ||||| || || ||||| Sbjct 26673 CAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTT 26732 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | || |||||| || |||| || || || |||||| ||| |||||||||||| Sbjct 26733 GGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTA 26792 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 |||||||||||| |||||||| ||| ||| | || || || ||| || | | Sbjct 26793 GAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTG 26852 Query 221896 GGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT---TTTCATACCCG--GTATAGAGC 221950 |||| || ||| || ||| ||| | ||| | || || | ||| ||||| Sbjct 26853 TGCGCGAACAGTC-TCGCGAC-----CCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGC 26906 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | | || | ||||||||| | ||| | ||||| || ||| | || |||||||| Sbjct 26907 TT--CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGT 26964 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 |||||| |||||||| || | || |||||||||||| || |||||||| || | Sbjct 26965 GTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 27024 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 |||||||| | | || ||||||| ||||| ||| || | ||| || | || || Sbjct 27025 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 27084 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || | |||||||||||| ||||| || |||| ||| | || || || |||||||||||| Sbjct 27085 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCA 27144 Query 222191 CCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 ||||| || | ||| ||| | |||| | | || || | || | || || || Sbjct 27145 CCCTGGTCGA-CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATT 27203 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGAC 222307 ||| ||||| ||||| ||||| | || || | | | | | | | Sbjct 27204 AGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG-- 27261 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 | ||| ||||| || ||| || ||||||| || ||| ||||||| ||||| ||| Sbjct 27262 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 27321 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGGT 222426 || || || ||||||||| | || | || || || |||||||| || | | |||| Sbjct 27322 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 27381 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 | | ||||| |||| ||| || ||||||||| ||||| |||||| || Sbjct 27382 -GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTC 27440 Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546 ||| ||||| | | | | |||||| || |||||||| | || | |||| Sbjct 27441 GTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAG 27500 Query 222547 CATGTACTGGGGCCTCTCCACAGGACCCTTGGAG---CTGGAGAGCAGGTACGATTTTTC 222603 ||||| || || | ||| | || ||||| | || ||| || || || ||| Sbjct 27501 CATGTGTTGTGGGCGCTCGGC--GA-CCTTGCCGTTTATGCGGAGGAGATATGAACGTTC 27557 Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663 || |||||||| |||||| | | | || ||||| | | ||| || | || | || Sbjct 27558 GAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 27617 Query 222664 CAGCTCCGACTT-GTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGT 222722 |||| || ||| ||| | | | | || | | | | | ||||| | | || | Sbjct 27618 GAGCT-CGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGG--GTTG 27674 Query 222723 TCTCTTT--GGTGTCGGGGTTAACGTTGTGGTACAG--CTGCCACATGGCATCAGAGA-A 222777 ||||||| | | | |||||| || | || |||||| || | || || ||||| | Sbjct 27675 TCTCTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTAC----CACGAGAGAGA 27730 Query 222778 CGTG-TCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCAT 222836 || | ||||||||||| ||||| || || ||||| || | || | ||| | | Sbjct 27731 ATTGCTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGT 27790 Query 222837 AGTCAGGGTGCACGGTGGTCATGCTGGCTAGGGTCTGAGC 222876 |||| || || |||||||||| |||| ||||| ||| Sbjct 27791 AGTCGGGATGTGTGGTGGTCATGTAGGCTGCGGTCTCAGC 27830 >seq5 Length=1540376 Score = 239 bits (264), Expect = 8e-58 Identities = 570/854 (67%), Gaps = 24/854 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || ||||||||| || ||||| || || || Sbjct 776247 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 776188 Query 25540 AAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAAGTA 25595 |||||| | ||| |||| || || ||| | | ||||||| || | ||| || | Sbjct 776187 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGC-GCTTCTTCATCTCCCA 776129 Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655 ||| | || ||||| |||||||| ||||| || || |||||||| || ||| |||| Sbjct 776128 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 776069 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | || ||||| || | ||||| || |||||||||||||| || || || Sbjct 776068 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 776009 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || || ||||| ||| || | ||| | || ||||| ||| || || | Sbjct 776008 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACAT--CAG-CGAGCCCAA 775952 Query 25776 G-AGAGATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | || | | || || |||||||| |||| ||| ||||| | |||||| Sbjct 775951 GCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGA 775892 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| || |||||| | | ||| | | || || | | | || || || || || Sbjct 775891 CTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTTGTTGCATT 775832 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 || ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| | Sbjct 775831 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 775772 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || |||||||| || || ||||||||||||||| | | |||||||| | Sbjct 775771 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 775712 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 |||| || || |||||||| |||| | | || | | |||| || | ||| Sbjct 775711 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAG---AACAAGCCCAGCCCAGA 775655 Query 26073 GACCGTCTACAG-TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNN 26131 | | ||| | || |||||||| || || || ||||| ||| ||||||| Sbjct 775654 GTCTGTC-AGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACG 775596 Query 26132 NNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATG 26191 | ||||||||| | |||||| |||||||||| |||| | Sbjct 775595 CACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCG 775536 Query 26192 TGGCCGACCATCTGCTGT--GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAAC 26247 | || |||| |||||||| ||| || || || || ||||| |||| | ||| Sbjct 775535 TCGCTGACCGTCTGCTGTTGGCC--CTCGGCAACGTCAAGGTCTAC--CACGCCACCAAC 775480 Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307 || |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| | Sbjct 775479 CCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGC 775420 Query 26308 GTCGGCGACTATCA 26321 ||||||||||| || Sbjct 775419 GTCGGCGACTACCA 775406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843882765760