Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq16 288 1e-72 seq5 113 5e-20 >seq16 Length=840418 Score = 288 bits (318), Expect = 1e-72 Identities = 1121/1740 (64%), Gaps = 33/1740 (2%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 |||||| ||||| ||||||| || || | ||||| ||||| || ||||| || | Sbjct 27513 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGATGACATCGAGAAGGC 27454 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 75329 | | ||||| |||||| | ||||| ||| ||| |||| ||||| | || || | | Sbjct 27453 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 27395 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || |||||| ||| || ||||| |||||||| |||| || ||||||| Sbjct 27394 TCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 27335 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || ||| |||| || || | || || | | |||||| ||||| ||| |||| Sbjct 27334 ACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 27275 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 75507 | |||||||| | || | || | | || | | ||| || |||| || || Sbjct 27274 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGG--CTCATACATCGGTGGCAC 27217 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || ||| ||||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 27216 TAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 27157 Query 75568 TGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 ||| | || | || ||||| ||| | || |||| ||||| | || ||||| Sbjct 27156 TGTCGACCAGGGTGGCAACAAGCGTCC--AGGTG-CCTTCGCCATCTACCTCGAGCCATG 27100 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| || || || | | |||||||| | || ||||| || | || |||| || Sbjct 27099 GCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 27040 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | | |||||||| | | ||||||||||| ||||| ||||||||||| ||| | || Sbjct 27039 CGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAAGA 26980 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 || | ||| | || | || || || || || || ||| |||| | || Sbjct 26979 CAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGG 26920 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 ||| || || ||||| || ||| | || || || || | | | |||||| Sbjct 26919 TGAAGAATTCGAAGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGTCGCGAGACTGT 26860 Query 75862 ACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 | || | ||||| | || || || | ||||||| |||||||| | || | Sbjct 26859 TCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTT 26800 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 |||||| |||||||| ||||| ||| ||||| ||||| ||||| | || || ||| Sbjct 26799 TATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCG 26740 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 ||||| || || ||||| || ||| | |||||||| | | |||||| |||||||| Sbjct 26739 CAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTG 26680 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101 ||| ||||| || | ||||| || | |||| | | || | || ||||| | Sbjct 26679 CAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACAAGGCCGGCGTGTTTGACTT 26620 Query 76102 TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAG 76161 | || || || ||| ||||| || | || ||| || | ||| |||| || Sbjct 26619 CAAGAAGCTCCACGAAGTCACACAGGTCGTCACCCGCAACTTGAACAAGATCATCGAGGT 26560 Query 76162 AAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTT 76221 || || || || || || || || | || ||| |||| || ||| | Sbjct 26559 CAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCGGTAT 26500 Query 76222 GGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGA 76281 ||||||||||||||| || |||| || | |||| | || || ||||| || Sbjct 26499 GGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAGACGA 26440 Query 76282 AGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAG 76341 ||| ||| || | || | ||||| || ||||| || || || | || | Sbjct 26439 AGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACTTCCTC 26380 Query 76342 TTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCA 76401 || || | || | | | ||| | || |||| | || || ||||||| ||||| Sbjct 26379 ATGCGACATCGCAAAGGAACTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTATCCCA 26320 Query 76402 AGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTACGACTGGGAT 76459 || | || |||| ||||||| |||| || | ||| | || | || ||||||| Sbjct 26319 GGGTATCCTCCAGTACGATATGT-GGAATGTCACACCTA-CTGACCTCTGGGACTGGGCG 26262 Query 76460 GTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATG 76519 ||| ||||| || ||| | ||| | || ||| || | || ||||| ||| Sbjct 26261 TCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAACTCGCTGCTCATTGCACCCATG 26202 Query 76520 CCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACA 76579 ||||| |||||||| |||| || |||| || || || ||||| || |||||||| | Sbjct 26201 CCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACACCTCC 26142 Query 76580 AACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTC 76639 |||||||| | | |||||| |||||||| |||||||| | || Sbjct 26141 AACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTC 26082 Query 76640 AATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCG 76699 || ||||| | || ||||| ||||| || | |||||| | | || | | Sbjct 26081 AAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATCGCCGAT 26022 Query 76700 GGTGGTTCCATT--CAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCA 76757 || ||||| ||| || || || || | ||||| || || | |||| || ||| | Sbjct 26021 GGAGGTTCGATTGCCAGGAT-TCCCA-ACATCCCTGAGGAGACAAAGACCCTTTACAAGA 25964 Query 76758 CAGTGTGGGAAATCAAG--ATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTT 76815 | || ||||| ||| | ||| || ||||||| |||||||| || |||||| || Sbjct 25963 CCGTCTGGGAGATCTCGCAGCGAAGGA--TCATTGAGATGGCCGCTGACCGTGGTGCTTT 25906 Query 76816 CATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTC 76873 |||||| | |||| ||| | || | |||| | || || ||| |||| || Sbjct 25905 CATTGACC--AGTCTCAGTCGCTAAACATCCACATGAAGGAGCCTACTATGGGCAAGATC 25848 Query 76874 TCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 |||||||||| | || || ||||| || ||||| || || |||||||||||||| Sbjct 25847 ACTTCTATGCACTTTGCTGGC-TGGAAGGCTGGTCTCAAGACTGGCATGTACTATCTCCG 25789 >seq5 Length=1540376 Score = 113 bits (124), Expect = 5e-20 Identities = 300/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 |||||| | |||||| |||| || || ||| ||||||||||||||| ||| || ||| Sbjct 775854 TTCGCCAACCGCCTTGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTC 775795 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 | | || | ||| | |||||||| ||||| ||||| || ||| ||||| || || Sbjct 775794 GCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAG 775735 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG 65250 || || ||||| || ||||| | ||| || || ||| |||||| || Sbjct 775734 CTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTC-TCTCTCCT 775676 Query 65251 CG-TAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309 || || | |||| | || || || || ||| | | || || || |||||||| Sbjct 775675 CGAGAACAAGCCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGA 775616 Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369 | | | |||| | |||||||| ||||| ||| |||| |||||| || || Sbjct 775615 GCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCAT 775556 Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG---GGTGCCAC- 65425 || | | ||||| |||| || | || ||||| || ||||| || || Sbjct 775555 GTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCT-------GTTGGCCCTCGGCAACG 775503 Query 65426 CCA---TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGA 65482 || | | |||| | || || || ||||| ||||| |||||| || | ||| | Sbjct 775502 TCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTA 775443 Query 65483 AGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||||| |||||||| || || ||||| Sbjct 775442 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 775409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569010887520